Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M06
         (375 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein...    32   0.15 
U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein...    32   0.15 
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    30   0.62 
U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AF016673-5|AAB66123.1|  684|Caenorhabditis elegans Hypothetical ...    29   1.4  
Z35663-8|CAA84728.1|  249|Caenorhabditis elegans Hypothetical pr...    27   3.3  
AF099919-4|AAC68791.1|  230|Caenorhabditis elegans Hypothetical ...    27   4.4  
AF039041-8|AAB94189.2|  448|Caenorhabditis elegans Hypothetical ...    26   7.6  

>U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein
           1.0, isoform b protein.
          Length = 154

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +2

Query: 71  FKTKDVDAVFVE--RQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVEEF 244
           F+T++    +V+  + KKV S F +    +  D YY + + + V      +TN   V+E 
Sbjct: 37  FETEEEAQKYVDDRKPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEH 88

Query: 245 LKLYRIGYLPKYYEFSIFYQKLREEAIALFHLFYYAKD 358
           +K Y     P + ++S       EEAIA FH +Y  K+
Sbjct: 89  IKNYP---QPLHKKWSTL-----EEAIAYFHKYYEGKE 118


>U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein
           1.0, isoform a protein.
          Length = 155

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +2

Query: 71  FKTKDVDAVFVE--RQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVEEF 244
           F+T++    +V+  + KKV S F +    +  D YY + + + V      +TN   V+E 
Sbjct: 37  FETEEEAQKYVDDRKPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEH 88

Query: 245 LKLYRIGYLPKYYEFSIFYQKLREEAIALFHLFYYAKD 358
           +K Y     P + ++S       EEAIA FH +Y  K+
Sbjct: 89  IKNYP---QPLHKKWSTL-----EEAIAYFHKYYEGKE 118


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
 Frame = +2

Query: 125  SLFQDVDQVNVDDEYYKIGKDYDVEANIDXY----TNKKAVEEFLKLYR--IGYLPKY 280
            S+  DV ++++DD+Y+ +G  +D +   D        + AV  F  L+R    +LP Y
Sbjct: 2542 SMEDDVQRLDLDDDYFDMGGPFDAQRMDDMIFPPSFGRPAVTSFADLFRDDFDFLPPY 2599


>U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical
           protein ZC513.3 protein.
          Length = 619

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 293 WRTHSTWEDN-RFCTISRILQQLSYWCSXRC 204
           WRT +  E + +F  +SRIL+Q + W S  C
Sbjct: 542 WRTFAIREKSEKFPNVSRILRQKTSWVSKNC 572


>AF016673-5|AAB66123.1|  684|Caenorhabditis elegans Hypothetical
           protein T06D4.4 protein.
          Length = 684

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +2

Query: 17  AGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLS---LFQDVDQVNVD 160
           +GL+  +QS ++   +  F  K++DA+  +  K+ L+   +F  +D V  D
Sbjct: 297 SGLVRRIQSGILITNSSSFFGKNLDAIIQQTHKRTLANYLIFHFIDAVTFD 347


>Z35663-8|CAA84728.1|  249|Caenorhabditis elegans Hypothetical
           protein T04A8.9 protein.
          Length = 249

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 116 KVLSLFQDVDQVNVDDEYYKIGKDYDVEAN 205
           KVL L Q   Q ++   YYK+ K +  + N
Sbjct: 27  KVLGLAQSASQKDIKSAYYKLSKQHHPDTN 56


>AF099919-4|AAC68791.1|  230|Caenorhabditis elegans Hypothetical
          protein F40G9.12 protein.
          Length = 230

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 13 SSGAHCPRAIQCGVT 57
          +SG HCPR + CG T
Sbjct: 28 TSGDHCPRVLSCGHT 42


>AF039041-8|AAB94189.2|  448|Caenorhabditis elegans Hypothetical
           protein W03F8.2 protein.
          Length = 448

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 257 RIGYLPKYYEFSIFYQKLREEAIALFHLFYYAKDFET 367
           +I  +P+  +FSI  +KLRE     +H F+  +D +T
Sbjct: 158 KISIVPEKEDFSILEKKLRE--FNFYHGFFPREDLQT 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,885,948
Number of Sequences: 27780
Number of extensions: 145551
Number of successful extensions: 417
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)