Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M06
         (375 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40200.1 68418.m04878 DegP protease, putative contains simila...    29   1.3  
At5g27230.1 68418.m03248 expressed protein  ; expression support...    28   2.3  
At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to...    28   2.3  
At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative (CH...    27   3.1  
At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative (CH...    27   3.1  
At5g34900.1 68418.m04114 Ulp1 protease family protein contains P...    27   3.1  
At4g22320.1 68417.m03227 expressed protein                             27   3.1  
At5g52920.1 68418.m06567 pyruvate kinase, putative similar to py...    27   4.1  
At5g07940.1 68418.m00920 expressed protein                             27   5.4  
At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase, put...    27   5.4  
At1g79670.2 68414.m09292 wall-associated kinase, putative simila...    26   7.1  
At1g79670.1 68414.m09291 wall-associated kinase, putative simila...    26   7.1  
At5g24450.1 68418.m02882 transcription factor-related low simila...    26   9.4  
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly...    26   9.4  

>At5g40200.1 68418.m04878 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 592

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 152 NVDDEYYKIGKDYDVEANIDXYTNKKAVEEFLKLYRI 262
           N +DEY K   DYD    +D  T K+A  + L  + I
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDILTTHCI 578


>At5g27230.1 68418.m03248 expressed protein  ; expression supported
           by MPSS
          Length = 948

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +2

Query: 86  VDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVEEFLK 250
           V A+ +E+++K L L  +  +     E+ K  KD+D+E   +    K+ VE+  K
Sbjct: 69  VKALELEKKEKELCLIDESMKAK-QSEFEKKEKDFDLEQKAEVEKRKREVEQLEK 122


>At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +2

Query: 29  ALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIG 181
           ++V S VV    Y F    V  +  E +KK+   F + DQ   DDE YK G
Sbjct: 306 SVVGSGVVIFGLYIFLLGKVRLMKEECEKKLPCRFNEDDQEEDDDEQYKKG 356


>At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 742

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 286 LIVLGKITDSVQFQEFFNSFLIGVVI 209
           ++V G ITD++     F +F++GV+I
Sbjct: 204 VLVCGFITDAIGIHSMFGAFVVGVLI 229


>At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 810

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 286 LIVLGKITDSVQFQEFFNSFLIGVVI 209
           ++V G ITD++     F +F++GV+I
Sbjct: 272 VLVCGFITDAIGIHSMFGAFVVGVLI 297


>At5g34900.1 68418.m04114 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At1g32840, At4g04010,
           At2g06430, At2g15140, At2g04980, At2g14130, At3g44500,
           At2g15190, At3g47260, At3g29210, At2g02210, At3g32900
          Length = 767

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +2

Query: 116 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANI-DXYTNKKAVEEFLKLYRIGYLPKYYEFS 292
           K+++L  DV ++ V+     IG   D ++ + D +TN    ++ L+L ++GY  K  E++
Sbjct: 287 KIVNLVNDVYEIEVNTI---IGNPEDFKSLVPDFHTNDTEFQQVLELVKMGYRLKKTEWN 343


>At4g22320.1 68417.m03227 expressed protein 
          Length = 238

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +2

Query: 80  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVEE 241
           K V    +E QKK ++  ++ D++  DD   KI +D  VE   D     K VEE
Sbjct: 115 KYVPIAVLEEQKKEITEIEEDDKIEEDD---KIDEDNKVEQE-DKVDEDKTVEE 164


>At5g52920.1 68418.m06567 pyruvate kinase, putative similar to
           pyruvate kinase isozyme G, chloroplast precursor
           [Nicotiana tabacum] SWISS-PROT:Q40546
          Length = 579

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 188 YDVEANIDXYTNKKAVEEFLKLYRIGYLPKYYEFS 292
           Y     I  +TN+K +++ L LY+ G  P Y EF+
Sbjct: 496 YRPSGTIYAFTNEKKIQQRLALYQ-GVCPIYMEFT 529


>At5g07940.1 68418.m00920 expressed protein
          Length = 1526

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 61  NVSLQDKRCRRSVCGAPEKGFIPFP 135
           N+S QDK C+    G  EK F+  P
Sbjct: 393 NISAQDKFCQMEDSGPAEKSFMKVP 417


>At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase,
           putative / 3-PGDH, putative similar to phosphoglycerate
           dehydrogenase, Arabidopsis thaliana, SP:O04130
          Length = 603

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 352 SIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQEFFNSFLIGVVID 206
           +I  Q+    S F   L E GE+ V GK+ D V       SF + V ++
Sbjct: 480 TITVQLSNVESKFASSLSESGEVKVEGKVKDGVPHLTKVGSFEVDVTLE 528


>At1g79670.2 68414.m09292 wall-associated kinase, putative similar
           to wall-associated kinase 4 GI:3355308 from [Arabidopsis
           thaliana]; isoform contains non-consensus AT-acceptor
           splice site.
          Length = 714

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 14  LAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEY 169
           +AG +A + S+  +P  YH   K  + +  E+ +  +S F     +NVD  +
Sbjct: 490 IAGALAYLHSAASTP-VYHRDVKTTNILLDEKYRAKVSDFGTSRSINVDQTH 540


>At1g79670.1 68414.m09291 wall-associated kinase, putative similar
           to wall-associated kinase 4 GI:3355308 from [Arabidopsis
           thaliana]; isoform contains non-consensus AT-acceptor
           splice site.
          Length = 751

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 14  LAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEY 169
           +AG +A + S+  +P  YH   K  + +  E+ +  +S F     +NVD  +
Sbjct: 527 IAGALAYLHSAASTP-VYHRDVKTTNILLDEKYRAKVSDFGTSRSINVDQTH 577


>At5g24450.1 68418.m02882 transcription factor-related low
           similarity to transcription factor IIIC63 [Homo sapiens]
           GI:5281316
          Length = 545

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +2

Query: 53  SPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXY 217
           S + +   TKD+       ++K   +  D D  ++DDEY +   D D+  +   Y
Sbjct: 434 SQRNHQETTKDMKKCKNTNKEKDDDVNADEDSEDLDDEYEEAANDDDISISSHGY 488


>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
           identical to GI:9957293; contains Pfam profile: PF01397
           terpene synthase family
          Length = 591

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = +2

Query: 104 ERQKKVLSLFQD--VDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVEEFLKLYRIGYLPK 277
           E+ +K+L+  Q   +DQ+   D+  K+G  Y  EA ID        ++   +        
Sbjct: 82  EKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKKDRTNIQESDLHAT 141

Query: 278 YYEFSIFYQ 304
             EF +F Q
Sbjct: 142 ALEFRLFRQ 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,439,813
Number of Sequences: 28952
Number of extensions: 134614
Number of successful extensions: 361
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)