Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M05
         (423 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    23   1.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   3.7  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   3.7  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   6.5  

>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 182 FPKNSPKKSGSKL 144
           FP+N PKK  SKL
Sbjct: 157 FPENKPKKIRSKL 169


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 15  CDSIKKKS*NTSQNDASTICNGDR 86
           CDS KKK     Q +   +  GDR
Sbjct: 171 CDSKKKKGPTPRQQEELCLVCGDR 194


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 79  VTVILMSCSEQATTSGSSKVN 141
           V++  M+CS Q  + GSS +N
Sbjct: 35  VSMPSMNCSPQGASFGSSMLN 55


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -1

Query: 201 LSTIGSFPEKFAQEIWIKIDIYFRAARC 118
           L  + + P ++  E W   +   RAA+C
Sbjct: 446 LPVLKNMPSQYIHEPWTAPEQVQRAAKC 473


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,746
Number of Sequences: 336
Number of extensions: 1103
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9384961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)