Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M05
         (423 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,585...    27   8.2  

>05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,
            5859440-5859517,5859623-5860090,5860378-5860437,
            5860442-5860666,5860791-5860952,5861502-5861870,
            5861950-5863390,5863598-5863701,5863744-5863779,
            5863780-5863977,5864275-5864538
          Length = 1251

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +1

Query: 16   VIVLKKNLKIHRRMMRLQFVMVTVILMSCSEQATTSGSSKVNINFDPDFLGEFFGKTPNG 195
            V+ LK + ++H    + QFV       S S +A++  +S +  + DP  +   +G    G
Sbjct: 899  VVTLKDSSQVHSASSQ-QFVRTGPWTQSASHEASSPSTSALKPSLDPPAMKNLYGGFTQG 957


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,288,646
Number of Sequences: 37544
Number of extensions: 104691
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)