Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M05
         (423 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016449-11|AAG23992.1|  353|Caenorhabditis elegans Serpentine r...    28   2.4  
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ...    27   5.5  
U59212-1|AAB09671.1|  428|Caenorhabditis elegans transmembrane p...    26   9.7  
U39677-4|AAN71842.1|  428|Caenorhabditis elegans Innexin protein...    26   9.7  

>AF016449-11|AAG23992.1|  353|Caenorhabditis elegans Serpentine
           receptor, class t protein7 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 10  CFVIVLKKNLKIHRRMMRLQFVMVTVILMSCSEQAT 117
           CF+ +LK NL++    + L   +V ++ +SC+  AT
Sbjct: 55  CFLAILKLNLRVPVYQLMLFLSIVDMLQLSCNSIAT 90


>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical
           protein F54D1.5 protein.
          Length = 1406

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 224 VSLLSQLFCPPLGVFPKNSPKKSGSKLIFTLELPDVVACSEHDIKIT 84
           V +L+ L CPP  +F    PK S +  + + E P+ +      I  T
Sbjct: 780 VRVLTALICPPAILFMAYKPKHSKTARLLSEETPEQLPYPRESITST 826


>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1122

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 224 VSLLSQLFCPPLGVFPKNSPKKSGSKLIFTLELPDVVACSEHDIKIT 84
           V +L+ L CPP  +F    PK S +  + + E P+ +      I  T
Sbjct: 496 VRVLTALICPPAILFMAYKPKHSKTARLLSEETPEQLPYPRESITST 542


>U59212-1|AAB09671.1|  428|Caenorhabditis elegans transmembrane
           protein protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 106 EQATTSGSSKVNINFDPDFLGEFFGKTPNGGQN 204
           E   T   SK++ NF    LG+  GK P  G N
Sbjct: 379 EGGVTQSPSKLDANFKTWLLGQTRGKPPFDGSN 411


>U39677-4|AAN71842.1|  428|Caenorhabditis elegans Innexin protein 1,
           isoform a protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 106 EQATTSGSSKVNINFDPDFLGEFFGKTPNGGQN 204
           E   T   SK++ NF    LG+  GK P  G N
Sbjct: 379 EGGVTQSPSKLDANFKTWLLGQTRGKPPFDGSN 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,596,751
Number of Sequences: 27780
Number of extensions: 97396
Number of successful extensions: 249
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)