Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M05
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   10.0 

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -1

Query: 189 GSFPEKFAQEIWIKIDIYFRAARCRCLF 106
           G FP +   ++W+ +      A C  LF
Sbjct: 343 GRFPPQSLTDMWLTMLSMISGATCYALF 370


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -1

Query: 189 GSFPEKFAQEIWIKIDIYFRAARCRCLF 106
           G FP +   ++W+ +      A C  LF
Sbjct: 311 GRFPPQSLTDMWLTMLSMISGATCYALF 338


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 15  CDSIKKKS*NTSQNDASTICNGDR 86
           CD+ KKK     Q +   +  GDR
Sbjct: 170 CDARKKKGPTPRQQEELCLVCGDR 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,175
Number of Sequences: 438
Number of extensions: 1095
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)