Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M05
         (423 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21530.1 68417.m03111 transducin family protein / WD-40 repea...    27   5.2  

>At4g21530.1 68417.m03111 transducin family protein / WD-40 repeat
           family protein contains 1 WD-40 repeat (PF00400);
           similar to anaphase-promoting complex subunit 4
           GI:6180011 [Homo sapiens]; supported by EST GB:AU237382
          Length = 510

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 18  DSIKKKS*NTSQNDASTICNGDRDFNVMF 104
           DS+ + S NTS    + +C GDRD N+ F
Sbjct: 164 DSLAELS-NTSFRKFNILCTGDRDGNICF 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,033,329
Number of Sequences: 28952
Number of extensions: 87984
Number of successful extensions: 235
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)