Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M04
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    34   0.14 
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30...    33   0.19 
05_03_0231 - 10696096-10696315,10696348-10696697                       31   0.77 
01_05_0198 + 19170217-19171701                                         28   7.2  
12_02_0709 - 22359705-22360292,22360396-22360560,22360650-223611...    28   9.5  

>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 21/59 (35%), Positives = 32/59 (54%)
 Frame = +2

Query: 188 LKSREVKFNDYHLVDYLSGEFLEEQYRGQRDLAGKASTLRKLLALHSVLGEFIFDKKLL 364
           L S   + ND  L D++  EFLEEQ    + ++   + LR++   H   G + FD+KLL
Sbjct: 196 LHSVASRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRVGKGH---GVWHFDQKLL 251


>11_01_0040 -
           304439-304482,304589-304652,304766-304831,305509-305640,
           305744-305804,305885-306018,306310-306654
          Length = 281

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +2

Query: 212 NDYHLVDYLSGEFLEEQYRGQRDLAGKASTLRKLLALHSVLGEFIFDKKLL 364
           ND  L D++  EFLEEQ    + ++   + LR++   H   G + FD+KLL
Sbjct: 230 NDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRVGKGH---GVWHFDQKLL 277


>05_03_0231 - 10696096-10696315,10696348-10696697
          Length = 189

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +1

Query: 19  HRQKLRTCILQ*RGRCFGGCSEHGIVRNKEHQRRH*RMREGSQTQGKQQQR 171
           H Q L +C++  R R  G  + H   R++  +RR  R+R  +Q  G+Q++R
Sbjct: 93  HGQMLSSCLMACRRRSAGAVATH---RSQPRRRRATRLRVKAQPSGQQRRR 140


>01_05_0198 + 19170217-19171701
          Length = 494

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 302 GSRPCRRGHVGLCIAPPGIRQIDSPQDGS 216
           G+    RGH+GL  A PG+R +++   GS
Sbjct: 37  GAATTTRGHLGLVRAHPGLRDLNAALAGS 65


>12_02_0709 -
           22359705-22360292,22360396-22360560,22360650-22361157,
           22361159-22361577,22362261-22362722,22362853-22364415
          Length = 1234

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 230 DYLSGEFLEEQYRGQRDLAGKASTLRKLL 316
           DY+SG  + +   GQ+DL  + + +RKL+
Sbjct: 172 DYVSGAMILDTILGQKDLTAQHALIRKLV 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,919,991
Number of Sequences: 37544
Number of extensions: 367438
Number of successful extensions: 929
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)