Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M04
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.021
SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.15 
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_42513| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)                 29   3.1  
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            29   5.5  
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)                   28   7.3  
SB_47437| Best HMM Match : GlcNAc_2-epim (HMM E-Value=2.1)             28   9.6  
SB_5120| Best HMM Match : Pigment_DH (HMM E-Value=6e-09)               28   9.6  

>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 36.7 bits (81), Expect = 0.021
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = +2

Query: 206 KFNDYHLVDYLSGEFLEEQYRGQRDLAGKASTLRKLLALHSVLGEFIFDKKLLGMD 373
           K  D  + D++ G FL EQ    ++LAG  + L++   +   LGE+ +D + +G D
Sbjct: 306 KHGDAQMTDFIEGNFLTEQVEAIKELAGHLTNLKR---VGPGLGEYQYDHETIGGD 358



 Score = 34.7 bits (76), Expect = 0.084
 Identities = 21/51 (41%), Positives = 28/51 (54%)
 Frame = +2

Query: 215 DYHLVDYLSGEFLEEQYRGQRDLAGKASTLRKLLALHSVLGEFIFDKKLLG 367
           D  + D+L   FL EQ    + LA   STL++   L   LGE+ FDK+ LG
Sbjct: 89  DPQVQDFLESNFLGEQVDSIKTLANYVSTLQR---LGGGLGEYQFDKETLG 136


>SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +2

Query: 206 KFNDYHLVDYLSGEFLEEQYRGQRDLAGKASTLRKLLALHSVLGEFIFDKKLL 364
           K  D  + D+L   +L EQ    ++LAG  + L++   +   LGEF FDK  L
Sbjct: 253 KHGDSQMQDWLESHYLTEQVEAIKELAGHMTNLKR---VGPGLGEFQFDKHTL 302


>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +2

Query: 206 KFNDYHLVDYLSGEFLEEQYRGQRDLAGKASTLRKLLALHSVLGEFIFDKKLL 364
           K  D  + D+L   +L EQ    ++LAG  + L++   +   LGEF FDK  L
Sbjct: 238 KHGDSQMQDWLESHYLTEQVEAIKELAGHLTNLKR---VGPGLGEFQFDKLTL 287


>SB_42513| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)
          Length = 519

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 448 FSFINTTTIVIKLNMTWGILVSSLDVHAEQLLVEDKFSKDRVEGQKLPKGRG 293
           F F     +++ +NM   ++  S +  AEQ  V+ K S+ R+    + KG G
Sbjct: 40  FGFFQVIAVIVAVNMLIAMMTRSFESIAEQADVKWKVSRTRLWMSWIQKGSG 91


>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 375 TSMPSNFLSK-INSPRTEWRARSFLRVEALPARSRWPLYCSSR 250
           T  P+N   + INSPRT   A S  RV   P R++ P Y S R
Sbjct: 63  TPFPANSPPRVINSPRTPLPANSTRRVHQSP-RNKLPAYTSPR 104


>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 2675

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 274  LASVLLLQEFAR*IVHKMVVVEFDLPGFKFLGLRIFVVVFL 152
            +A +L L EFA+ I   +V +   LP    +G  +F+V+F+
Sbjct: 2465 VARLLRLLEFAKGIRQLLVALIISLPALLNIGTLLFLVIFI 2505


>SB_47437| Best HMM Match : GlcNAc_2-epim (HMM E-Value=2.1)
          Length = 786

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 197 REVKFNDYHLVDYLSGEFLEEQYRGQRDLAGKAST 301
           +  +F   HL D  SGE L   YRG +D   + +T
Sbjct: 492 KAAEFVRTHLYDKSSGELLRSCYRGDKDSIAQIAT 526


>SB_5120| Best HMM Match : Pigment_DH (HMM E-Value=6e-09)
          Length = 820

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 224 LVDYLSGEFLEEQYRGQRDLAGKASTLRKLLALHSVLGEFIFDKKLLGMDV*AGD 388
           + D+++   +++   G  D+ G A     LL +  V+ + + D  LLG+    GD
Sbjct: 559 VTDFINDAMMDDMLLGVPDVVGDAMMDDMLLGVPDVINDAMMDDLLLGVPDVVGD 613


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,934,881
Number of Sequences: 59808
Number of extensions: 435533
Number of successful extensions: 917
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)