Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M04
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11050.1 68416.m01333 ferritin, putative similar to ferritin ...    36   0.022
At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ...    31   0.64 
At3g18295.1 68416.m02327 expressed protein                             29   4.5  

>At3g11050.1 68416.m01333 ferritin, putative similar to ferritin
           subunit cowpea2 precursor GI:2970654 (Vigna
           unguiculata); contains Pfam profile PF00210:
           Ferritin-like domain
          Length = 253

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 23/63 (36%), Positives = 35/63 (55%)
 Frame = +2

Query: 188 LKSREVKFNDYHLVDYLSGEFLEEQYRGQRDLAGKASTLRKLLALHSVLGEFIFDKKLLG 367
           L+S  VK ND  LVD++  EFL EQ    + ++   + LR++   H   G + FD+ LL 
Sbjct: 194 LQSVGVKNNDVQLVDFVESEFLGEQVEAIKKISEYVAQLRRIGKGH---GVWHFDQMLLN 250

Query: 368 MDV 376
            +V
Sbjct: 251 DEV 253


>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = +2

Query: 188 LKSREVKFNDYHLVDYLSGEFLEEQYRGQRDLAGKASTLRKLLALHSVLGEFIFDKKLL 364
           L S   K ND HL D++  EFL EQ    + ++   + LR++   H   G + F++ LL
Sbjct: 202 LHSVASKNNDVHLADFIESEFLTEQVEAIKLISEYVAQLRRVGKGH---GTWHFNQMLL 257


>At3g18295.1 68416.m02327 expressed protein
          Length = 216

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 363 SNFLSKINSPRTEWRARSFLRVEALPARSRWPLYCSSRNSP 241
           S  L     P   W  + FLR   LP  +R P + SS +SP
Sbjct: 10  SKRLHNFTLPYLRWGQQRFLRCVKLPHHNRSPSFPSSSSSP 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,508,448
Number of Sequences: 28952
Number of extensions: 300561
Number of successful extensions: 696
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)