Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M03
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    28   0.77 
SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces p...    27   1.3  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    26   3.1  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    25   4.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   5.4  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    24   9.5  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    24   9.5  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    24   9.5  

>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 27.9 bits (59), Expect = 0.77
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 33  TILAVLLGLVALTYVNGNKVKSYICQG-YYGCEKCCVHLGSGCEKLKSSPFW 185
           T+L + L LV+ T  +    +   C G YY    CCV +GS C  + S+P++
Sbjct: 9   TVLTLALSLVSKTSASQCSPRYGTCGGIYYDGPTCCV-VGSSC--IYSNPWY 57


>SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 86  ITVDVSQGYEAQ*NSQDCEFRHF 18
           + VDV +G+E   +++DCEF+ F
Sbjct: 162 MAVDVPEGFELLGSTEDCEFQIF 184


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 18/55 (32%), Positives = 21/55 (38%)
 Frame = -1

Query: 283 LNTSKFNSLMESPKYGSTPSGQVQVQTSV*LPNQNGEDFNFSQPEPR*TQHFSQP 119
           L+   FN   +  K          V   V  PNQ   + NFS       QHFSQP
Sbjct: 192 LDPEVFNQQSKETKKSLQVPPSRNVPPPVTRPNQYNPEPNFSLSSGYPQQHFSQP 246


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 69  TYVNGNKVKSYIC--QGYYGCEKCCVHLGSGCEKLKSSPFWFG 191
           T+ + N++    C  + +Y  +  C H G+   K ++S +W G
Sbjct: 361 TFEHANRIICGYCAMESFYKKDATCPHCGNMTVKKQTSAYWEG 403


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 113 ILRLREMLCSPWFRLREVKIL 175
           +L+L E +  PW   REVK+L
Sbjct: 120 VLKLLENMPMPWEEYREVKVL 140


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 378 ETNEWFFLFKTSSNSHCFYT 319
           E N+W  L+K S N+   YT
Sbjct: 719 EINDWIGLYKLSDNASDLYT 738


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 9   TRNEMSKFTILAVLLGLVALTYVNGNKVKSYIC 107
           T  E+  FTIL  + GL+   + N +   +Y C
Sbjct: 684 THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQC 716


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 356 YLKQARTLIVFILLITLKTID 294
           YL + RTL+ F L+   KTID
Sbjct: 872 YLNRERTLLNFYLIENSKTID 892


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,725,863
Number of Sequences: 5004
Number of extensions: 33979
Number of successful extensions: 98
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)