Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M03
         (454 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         30   1.0  
SB_31607| Best HMM Match : NOG1 (HMM E-Value=0.74)                     27   7.3  
SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08)             27   9.6  
SB_40492| Best HMM Match : PROCN (HMM E-Value=0)                       27   9.6  
SB_8067| Best HMM Match : TSP_1 (HMM E-Value=1.1e-22)                  27   9.6  
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       27   9.6  
SB_22842| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = +3

Query: 84   NKVKSY--ICQGYYGCEKCCVHLGSGCEKLKSSPFWFGSYTEVCTCTCPDGVDP-YLGDS 254
            +++K Y  +C   Y          +G    K SP W GS       TCP G+ P  +GD+
Sbjct: 1497 DQIKRYCGVCYPGYCSRHGTCSSNNGTRTCKCSPSWSGSVCSKLNITCPAGLIPCAVGDN 1556


>SB_31607| Best HMM Match : NOG1 (HMM E-Value=0.74)
          Length = 146

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 137 TAFLATVVSLAYVGLHFITVDVSQGYEAQ*NSQDCEFRHFVPRSL 3
           +AF+ T+  L     +F  + +S GY+   + Q CE+R +  + L
Sbjct: 28  SAFITTLCQLKDAIYYFNDMTLSAGYKRCSSRQKCEYRMYKKKEL 72


>SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1612

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 234 RLRLDRYRCRPQCNFRTRT 178
           +L LD   C P CNF T+T
Sbjct: 141 KLYLDNTYCHPSCNFPTKT 159


>SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08)
          Length = 1381

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = +3

Query: 93  KSYIC----QGYYGCEKCCVHLGSGCEKLKSSP 179
           +SY C    +GY      CV++ +GC +L  SP
Sbjct: 395 RSYFCTACKKGYNNVRHACVNICNGCGELDCSP 427


>SB_40492| Best HMM Match : PROCN (HMM E-Value=0)
          Length = 1784

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +2

Query: 101 HMPR-ILRLREMLCSPWFRLREVKIL 175
           +MP  +L+L E +  PW ++R+VK+L
Sbjct: 80  YMPHAVLKLLENMPMPWEQIRDVKVL 105


>SB_8067| Best HMM Match : TSP_1 (HMM E-Value=1.1e-22)
          Length = 869

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +3

Query: 129 KCCVHLGSGCEKLKSSPFWFGSYTEVCTCTCPDG 230
           K  V L   C K+   P W  S    CT TC  G
Sbjct: 153 KPTVTLTQKCNKVNCPPEWVPSDWSACTKTCKGG 186


>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 123 CEKCCVHLGSGCEKLKSSPFWFGSYTEVCTCTCPDGVDPYLGDSISE 263
           C+K C++  S C K   S     + T  C C     +D Y GDS  E
Sbjct: 532 CDKPCINCNSPCPKCYHSNGACNAATGKCVC-----LDGYHGDSCLE 573


>SB_22842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 757

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 105 CQGYYGCEKCCVHLGSGCEKLKS 173
           C+  Y   + CV +G+GC K+K+
Sbjct: 85  CRNCYRFHRFCVFVGTGCFKMKT 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,532,115
Number of Sequences: 59808
Number of extensions: 252553
Number of successful extensions: 650
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)