Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M03
         (454 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22840.1 68415.m02712 expressed protein identical to transcri...    28   2.6  
At5g51750.1 68418.m06417 subtilase family protein similar to sub...    27   4.5  
At1g12610.1 68414.m01465 DRE-binding protein, putative / CRT/DRE...    27   4.5  
At5g41590.1 68418.m05053 hypothetical protein contains Pfam prof...    27   5.9  
At2g05530.1 68415.m00585 glycine-rich protein                          27   5.9  
At2g05380.1 68415.m00566 glycine-rich protein (GRP3S) identical ...    27   5.9  
At4g37740.1 68417.m05343 expressed protein identical to transcri...    27   7.8  
At4g13235.1 68417.m02058 hypothetical protein late embryogenesis...    27   7.8  

>At2g22840.1 68415.m02712 expressed protein identical to
           transcription activator GRL1 [Arabidopsis thaliana]
           GI:21539880 (unpublished); supporting cDNA
           gi|21539879|gb|AY102634.1|
          Length = 530

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 265 NSLMESPKYGSTPSGQVQVQTSV*LPNQN 179
           NS   SPK+GS+P+G +Q  T   L N +
Sbjct: 466 NSTTNSPKFGSSPTGVLQKSTFGSLSNSS 494


>At5g51750.1 68418.m06417 subtilase family protein similar to
           subtilisin-like protease GI:3687307 from [Lycopersicon
           esculentum]
          Length = 780

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = -3

Query: 242 IRVDSVWTGTGADLSVTSEPERRGF*LLAAGTKVNTAFLATVVSL 108
           + + + WTG  A  S++S+P R  F +L +GT ++   ++ V +L
Sbjct: 529 VNILAAWTGDMAPSSLSSDPRRVKFNIL-SGTSMSCPHVSGVAAL 572


>At1g12610.1 68414.m01465 DRE-binding protein, putative /
           CRT/DRE-binding factor, putative similar to DREB1A
           GI:3738224 from [Arabidopsis thaliana] and to
           transcriptional activator CBF1 GI:1899058 from
           [Arabidopsis thaliana
          Length = 209

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 147 GSGCEKLKSSPFWFGSYTEVCT 212
           GSG E+  SS + FG Y EV T
Sbjct: 144 GSGSEERNSSSYGFGDYEEVST 165


>At5g41590.1 68418.m05053 hypothetical protein contains Pfam profile
           PF04525: Protein of unknown function (DUF567)
          Length = 221

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 27  KFTILAVLLGLVALTYVNG-NKVKSYICQGYYGCEKC-CVHL 146
           K  IL+    ++A  Y    +K  SYI +G Y C+ C  VH+
Sbjct: 129 KMNILSTKSDILAYVYSGSFDKKNSYIIKGSYRCKSCKIVHV 170


>At2g05530.1 68415.m00585 glycine-rich protein 
          Length = 115

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 108 QGYYGCEKCCVHLGSGCE 161
           +GY+GC +CC + G   +
Sbjct: 93  RGYHGCSRCCSYAGEAVQ 110


>At2g05380.1 68415.m00566 glycine-rich protein (GRP3S) identical to
           cDNA glycine-rich protein 3 short isoform (GRP3S)
           GI:4206766
          Length = 116

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 108 QGYYGCEKCCVHLGSGCE 161
           +GY+GC +CC + G   +
Sbjct: 94  KGYHGCSRCCSYAGEAVQ 111


>At4g37740.1 68417.m05343 expressed protein identical to
           transcription activator GRL2 [Arabidopsis thaliana]
           GI:21539882 (unpublished); supporting cDNA
           gi|21539881|gb|AY102635.1|
          Length = 535

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 265 NSLMESPKYGSTPSGQVQVQTSV*LPNQN 179
           NS   SP +GS+P+G +Q  T   L N +
Sbjct: 486 NSTTNSPTFGSSPTGVLQKSTFCSLSNNS 514


>At4g13235.1 68417.m02058 hypothetical protein late embryogenesis
           abundant protein -Picea glauca,PID:g1161171
          Length = 129

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/48 (33%), Positives = 18/48 (37%)
 Frame = +3

Query: 72  YVNGNKVKSYICQGYYGCEKCCVHLGSGCEKLKSSPFWFGSYTEVCTC 215
           YV G   K   C  Y  C     HLG  CEKL     +      + TC
Sbjct: 48  YVAGECAKLPRCNKY--CVSNGFHLGGFCEKLSPQASYLSCVYVIMTC 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,812,229
Number of Sequences: 28952
Number of extensions: 176281
Number of successful extensions: 488
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)