Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L24
         (632 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    22   3.7  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   6.5  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.6  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   8.6  

>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 497 YLGKYVFNS*SGDAIYPSYRDKKLLI 420
           Y  KY FN    D  YP  +DK+  I
Sbjct: 132 YFEKYGFNGLDIDWEYPEAKDKENFI 157


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 22  PFFSTGFKPAMETLNIKPLSQDNEWSPE 105
           P  + G +P +ETL++      N W P+
Sbjct: 99  PRLAYGKRPGVETLSVGSEFIKNIWVPD 126


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 454 MASPDQELNTYFPKYNP 504
           M+ P   LN   PKY P
Sbjct: 137 MSPPGNVLNLTMPKYEP 153


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 454 MASPDQELNTYFPKYNP 504
           M+ P   LN   PKY P
Sbjct: 137 MSPPGNVLNLTMPKYEP 153


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,534
Number of Sequences: 336
Number of extensions: 3403
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)