Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L24
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    27   2.3  
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy...    26   3.9  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           25   9.1  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   9.1  

>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
 Frame = +2

Query: 257 TKPKSANGRPTTPYHHPGGGHPARLC----TSLSNSTKSWSL 370
           +KP+  N  P   Y  PG    A+LC    T L   TK + L
Sbjct: 329 SKPQIVNAPPAPSYFSPGSSFGAQLCANGSTLLRADTKQYGL 370


>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 40  FKPAMETLNIKPLSQDNEWSPEA 108
           + P  + +N++ +  D EW+PEA
Sbjct: 42  YPPNAKDINLEDMLDDEEWNPEA 64


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +1

Query: 352 YEELVAKAEALLSRLVVSENYDSINNFLSLYDGYMASPDQELNTYFPKYNPPIRAHK 522
           Y E VA    LL  +V   NY  + +  SLYD + ASP     T    ++ P++A K
Sbjct: 281 YFENVALYTNLLLAIVFVYNY--LPSCPSLYDLFFASPVFRKRTSSFYFSQPLKATK 335


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 352 YEELVAKAEALLSRLVVSENYDSINNFLSLY 444
           YE+L+ + + +LSR+       ++ N LSLY
Sbjct: 236 YEKLLPRYQLVLSRIYPYAAASNLRNLLSLY 266


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 379  ALLSRLVVSENYDSINNFLSLYDGYMASPD 468
            A L RLV+SE+   I+  L++Y     +PD
Sbjct: 1914 AKLPRLVISEDVQGISQPLTVYQFICKAPD 1943


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,680
Number of Sequences: 5004
Number of extensions: 53119
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)