Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_L24
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0332 + 16880184-16881017,16881334-16881462,16882685-168827... 31 1.0
09_04_0423 + 17426802-17427092 30 1.8
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194... 30 1.8
02_01_0490 + 3541056-3542276 30 1.8
02_01_0302 - 2021221-2023305 29 3.1
08_02_0590 + 19044193-19044364,19044464-19045047,19045085-190460... 28 5.4
09_02_0445 + 9446171-9447496 28 7.1
06_03_0270 + 19009412-19009888,19009936-19011048,19011810-190118... 27 9.4
03_06_0416 - 33780911-33781861 27 9.4
>07_03_0332 +
16880184-16881017,16881334-16881462,16882685-16882750,
16883159-16883224,16884419-16884457,16884858-16885028
Length = 434
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 296 YHHPGGGHPARLCTSLSNSTKSWSLKP 376
+HH G P RL +LS+ +WS+ P
Sbjct: 95 HHHHAAGAPERLTANLSDLVSNWSIAP 121
>09_04_0423 + 17426802-17427092
Length = 96
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 221 GEPSG*ADSA--SRTKPKSANGRPTTPYHHPGGGHPA 325
G+P+ A + +K S +GRPT+P H PG G+ A
Sbjct: 55 GQPAAAAGGGVTAASKMASTDGRPTSPGHSPGIGNKA 91
>04_03_1002 -
21617339-21617362,21618476-21618565,21618755-21619432,
21619536-21619772,21619849-21619896,21619995-21620045,
21620301-21620426,21620557-21620697,21621165-21621401,
21622467-21622571,21622812-21622982,21623306-21623380,
21623754-21623936,21624151-21624297,21624365-21624472,
21624605-21624709,21625109-21625213,21625322-21625381,
21625512-21625579,21625876-21625954,21626208-21626267,
21626445-21626498,21626834-21626886,21627405-21627494,
21628265-21628362,21628464-21628852
Length = 1193
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 215 AAGEPSG*ADSASRTKPKSANGRPTTPYHHPGGGHPARLCTSLSNSTKSWSLKP 376
+ G PS + S+S + GRPTTP GG P + + ST S +P
Sbjct: 42 SGGRPSTPSSSSSA----AGGGRPTTPSSSSAGGRPTTPSAAFARSTTPSSGRP 91
>02_01_0490 + 3541056-3542276
Length = 406
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 239 ADSASRTKPKSANGRPTTPYHHPGGGHPARLCTS 340
A +S ++P+SA GR T P+ GGG L TS
Sbjct: 372 AKDSSASRPRSALGRKTAPHAGNGGGASRDLGTS 405
>02_01_0302 - 2021221-2023305
Length = 694
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +2
Query: 161 PHLPCPRRVKSVPYAV*RAAGEPSG*ADSASRTKPKSANGRPTTPYH--HPGGGHPARLC 334
P P P + P ++ P G + S + + P G+P+TP H PG P+
Sbjct: 442 PSYPSPPSSATTP-----SSHSPPGGSSSTTPSYPSPNGGKPSTPSHPSPPGSTTPSYPS 496
Query: 335 TSLSNSTKSWSLKPR 379
S++T S+ P+
Sbjct: 497 PPSSSTTPSYHSPPQ 511
>08_02_0590 +
19044193-19044364,19044464-19045047,19045085-19046059,
19046219-19046605
Length = 705
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +2
Query: 131 GSEQHAARTPPHLPCPRR-----VKSVPYAV*RAAGEPSG 235
G E+ AAR+PP LP P+R V+ P R A P G
Sbjct: 168 GLEERAARSPPPLPPPKRRAVSAVRQFPPGCGRDAAVPLG 207
>09_02_0445 + 9446171-9447496
Length = 441
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = +2
Query: 122 EPLGSEQHAARTPPHLPCPRRVKSVPYAV*RAAGEPSG*ADSASRTKPKSANGRPTTPY- 298
EPL P + P R+ + + AA + +G S S + SA P TPY
Sbjct: 165 EPLTRRHQGILRPQEMNSPYRICFGVFLIDGAAADETGGCISMSNFRVLSAVYEPETPYC 224
Query: 299 -HHPGGGHPAR 328
+ G G P R
Sbjct: 225 GYWHGHGTPPR 235
>06_03_0270 +
19009412-19009888,19009936-19011048,19011810-19011899,
19011928-19012027,19012135-19012333,19012559-19012679
Length = 699
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Frame = +2
Query: 170 PCPRRVKSVPYAV*RAAGEPS---G*ADSASRTKPKSANGRPTTPYHHPGGGHPARLCTS 340
P P S A R++ PS G + + P +GR T+P P P+ T+
Sbjct: 78 PTPSSSPSTASAAARSSRTPSAAPGGTSARGSSTPGGRSGRGTSPARAPSTSAPSTSPTA 137
Query: 341 LSNSTKSWSLKPR 379
+ S +W + R
Sbjct: 138 TTRSGVAWICRVR 150
>03_06_0416 - 33780911-33781861
Length = 316
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 251 SRTKPKSANGRPTTPYHHPGGGHPARLCTSLSNST 355
SRT P S R T P GG P+RL + + T
Sbjct: 2 SRTTPSSPLSRATPPRSPTAGGTPSRLAVAPPSPT 36
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,653,670
Number of Sequences: 37544
Number of extensions: 416678
Number of successful extensions: 1287
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -