Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_L24
(632 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23) 29 4.1
SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_6679| Best HMM Match : Keratin_B2 (HMM E-Value=0.0084) 28 5.5
SB_51094| Best HMM Match : VWA (HMM E-Value=0) 28 5.5
SB_38709| Best HMM Match : Ank (HMM E-Value=3.6e-10) 28 5.5
SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +2
Query: 182 RVKSVPYAV*RAAGEPSG*ADSASRTKPKSANGRPTTPYHHPGGGHPARLCT--SLSNST 355
R ++ AV A + ++S S T P+ ++ TP H P H AR + SL+
Sbjct: 767 RPRTSKVAVWETAQATTQHSESVSETSPQLSSTAQQTPPHSPATRHNARTSSPQSLATRH 826
Query: 356 KSWSLKPR 379
+W+ P+
Sbjct: 827 NAWTSSPQ 834
>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1271
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 245 SASRTKPKSANGRPTTPYHHPGGGHPA 325
S +R PK A P TPY+HP PA
Sbjct: 141 SNTRHNPKVAVPHPNTPYYHPKPADPA 167
>SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)
Length = 1178
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +2
Query: 215 AAGEPSG*ADSASRTKPKSANGR---PTTP-YHHPGGGHPARLCTSLSN 349
+ G P A + P + GR P+ P YHHP G+P+ TS SN
Sbjct: 47 SGGFPEDDARTYDDEHPYTPPGRRQVPSEPWYHHPDSGYPSSSPTSKSN 95
>SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +2
Query: 215 AAGEPSG*ADSASRTKPKSANGR---PTTP-YHHPGGGHPARLCTSLSN 349
+ G P A + P + GR P+ P YHHP G+P+ TS SN
Sbjct: 91 SGGFPEDDARTYDDEHPYTPPGRRQVPSEPWYHHPDSGYPSSSPTSKSN 139
>SB_6679| Best HMM Match : Keratin_B2 (HMM E-Value=0.0084)
Length = 292
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 117 RRSHWGRSSTRPGPRRTYRV 176
RRS+W S +P PRR+YRV
Sbjct: 112 RRSYWD-SCVQPSPRRSYRV 130
>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
Length = 3544
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 475 LNTYFPKYNPPIRAHKHTCVGLGMEVMKRLKV 570
LN+Y+ PP KH C+G+ +K V
Sbjct: 389 LNSYYVMLRPPTANVKHMCIGIMTRALKDFDV 420
>SB_38709| Best HMM Match : Ank (HMM E-Value=3.6e-10)
Length = 218
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 254 VKPSQLNHSAPQRPVTRRMARSSLDVDTVGAAGS 153
++ + +HS P +P RRM+ + D D++ A S
Sbjct: 78 IRTIERSHSVPLKPAIRRMSSLNSDSDSLSACSS 111
>SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 740
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 251 SRTKPKSANGRPTTPYHHPGGG 316
S T+P S +G+P +HHPG G
Sbjct: 656 SDTEP-STSGKPNMHFHHPGSG 676
>SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Frame = +2
Query: 176 PRRVKSVPYAV*RAAGEPSG*ADSA------SRTKPKSANGRPTTPY 298
P V P R A EPS DS+ S KP S PTTPY
Sbjct: 377 PNSVIKTPAGKRRRANEPSKSQDSSPPQSVFSSPKPSSVISTPTTPY 423
>SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 389 AVSSSQKTMTRSITSYPYTMDIWRLLIRN*IHISLNTTLPFVLISTLASASVW 547
A+S+ KTM ++PY D+ RL + + + + L +L+ A VW
Sbjct: 73 AISNPNKTMFAQQPNFPYRGDVDRLDMHSLMFTVVMVCLIVLLVKAYLIACVW 125
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Frame = +1
Query: 403 SENYDSINNF-LSLYDGYMASPDQELN-------TYFPKYNPPIRAHKHT 528
SE NNF L L DG M D+ T FP NPP A K T
Sbjct: 3575 SERMQGQNNFKLKLQDGLMKQSDETNKRPITHTLTIFPSKNPPSEATKST 3624
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,766,550
Number of Sequences: 59808
Number of extensions: 432190
Number of successful extensions: 1239
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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