Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L24
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71178-2|CAA94875.1|  297|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z49131-6|CAA88979.1|  297|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>Z71178-2|CAA94875.1|  297|Caenorhabditis elegans Hypothetical
           protein B0024.2 protein.
          Length = 297

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
 Frame = +2

Query: 125 PLGSEQHAARTPPHLPCPRRVKSVPYAV*RAAGEPSG*ADSASRTKP---------KSAN 277
           P G + H    P  + CPR+           AG P+G    A R  P         K  N
Sbjct: 125 PRGQDNHQVHAP--IQCPRQQPGCVKCPRGPAG-PTGSIGQAGRPGPDGRPGQPGRKGNN 181

Query: 278 GRPTTPYHHPGGGHPAR 328
           GRP  P      GHP R
Sbjct: 182 GRPGQPAPQGNAGHPGR 198


>Z49131-6|CAA88979.1|  297|Caenorhabditis elegans Hypothetical
           protein ZC373.7 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +2

Query: 176 PRRVKSVPYAV*RAAGEPSG*ADSASRTKPKSANGRPTTP--YHHPGG-GHP 322
           P    + P    + A  P+G A SA    PK  +GRP  P    HPG  G P
Sbjct: 136 PINCPTAPSDCIKCAPGPAGPAGSAGPAGPKGPDGRPGQPGSAGHPGAPGQP 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,811,802
Number of Sequences: 27780
Number of extensions: 314200
Number of successful extensions: 813
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)