Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L24
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.3  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   7.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.5  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   9.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.9  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   9.9  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 389 AVSSSQKTMTRSITSYPYTMD 451
           +VS  + +MT S+TS P TM+
Sbjct: 394 SVSYERGSMTVSVTSKPSTME 414


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 382 LLSRLVVSENYDSINNFLSLYDGY 453
           ++S L  + NY + NN+ + Y+ Y
Sbjct: 81  IISSLSNNYNYSNYNNYNNNYNNY 104


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 254  VKPSQLNHSAPQRPVTRR 201
            V P+QL H A +   TRR
Sbjct: 1230 VPPNQLTHEASELDKTRR 1247


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 234 PLGSPAARHTAYGTL 190
           PLG   +RHT  G L
Sbjct: 76  PLGPETSRHTTLGLL 90


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 276 LADLGLVREAESA 238
           +AD GL RE ESA
Sbjct: 776 IADFGLSREIESA 788


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +1

Query: 367 AKAEALLSRLVVSENYDSINNFLSLYDGYMASPDQELNTYFPKY 498
           +K   ++S L  +  Y + NN+ + Y+ Y    +   N Y   Y
Sbjct: 309 SKEPKIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLY 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,896
Number of Sequences: 438
Number of extensions: 4077
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)