Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L24
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44790.1 68415.m05574 uclacyanin II strong similarity to ucla...    31   0.48 

>At2g44790.1 68415.m05574 uclacyanin II strong similarity to
           uclacyanin II GI:3399769 from [Arabidopsis thaliana];
           contains Pfam profile PF02298: Plastocyanin-like domain;
           identical to cDNA uclacyanin II GI:3399768
          Length = 202

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 22/65 (33%), Positives = 26/65 (40%)
 Frame = +2

Query: 128 LGSEQHAARTPPHLPCPRRVKSVPYAV*RAAGEPSG*ADSASRTKPKSANGRPTTPYHHP 307
           +G       TP H      +K     V  +AG P      A+ T P S  G PTTP   P
Sbjct: 99  VGINYFICSTPGHCRTNGGMKLAVNVVAGSAGPP------ATPTPPSSTPGTPTTPESPP 152

Query: 308 GGGHP 322
            GG P
Sbjct: 153 SGGSP 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,216,640
Number of Sequences: 28952
Number of extensions: 298436
Number of successful extensions: 746
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)