Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L23
         (473 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         30   1.1  
SB_31607| Best HMM Match : NOG1 (HMM E-Value=0.74)                     27   7.9  
SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = +1

Query: 94   NKVKSY--ICQGYYGCEKCCVHLGSGCEKLKSSPFWFGSYTEVCTCTCPDGVDP-YLGDS 264
            +++K Y  +C   Y          +G    K SP W GS       TCP G+ P  +GD+
Sbjct: 1497 DQIKRYCGVCYPGYCSRHGTCSSNNGTRTCKCSPSWSGSVCSKLNITCPAGLIPCAVGDN 1556


>SB_31607| Best HMM Match : NOG1 (HMM E-Value=0.74)
          Length = 146

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 147 TAFLATVVSLAYVGLHFITVDVSQGYEAQ*NSQDCEFRHFVPRSL 13
           +AF+ T+  L     +F  + +S GY+   + Q CE+R +  + L
Sbjct: 28  SAFITTLCQLKDAIYYFNDMTLSAGYKRCSSRQKCEYRMYKKKEL 72


>SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1612

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 244 RLRLDRYRCRPQCNFRTRT 188
           +L LD   C P CNF T+T
Sbjct: 141 KLYLDNTYCHPSCNFPTKT 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,827,699
Number of Sequences: 59808
Number of extensions: 280569
Number of successful extensions: 690
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)