Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_L23
(473 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18900.1 68415.m02205 transducin family protein / WD-40 repea... 29 2.1
At2g43200.1 68415.m05369 dehydration-responsive family protein s... 28 2.8
At2g22840.1 68415.m02712 expressed protein identical to transcri... 28 2.8
At5g51750.1 68418.m06417 subtilase family protein similar to sub... 27 4.9
At1g12610.1 68414.m01465 DRE-binding protein, putative / CRT/DRE... 27 4.9
At5g41590.1 68418.m05053 hypothetical protein contains Pfam prof... 27 6.5
At2g05530.1 68415.m00585 glycine-rich protein 27 6.5
At2g05380.1 68415.m00566 glycine-rich protein (GRP3S) identical ... 27 6.5
At4g37740.1 68417.m05343 expressed protein identical to transcri... 27 8.6
At4g13235.1 68417.m02058 hypothetical protein late embryogenesis... 27 8.6
>At2g18900.1 68415.m02205 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to LACK protective antigen (GI:13625467)
[Leishmania donovani]
Length = 804
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 278 ILTYLDXDKSIVLSVINSIKTMRVRACFK*KKPFM 382
++T + DK+I+LSV+ S T + CF K F+
Sbjct: 559 VITLWNPDKNILLSVLGSTLTPITKLCFAGKSEFL 593
>At2g43200.1 68415.m05369 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 611
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 414 PIQYHMEKLKPMNGFFYLKQARTLIVFILLITLKTIDLS 298
P Q H+ KL P F + ++ +L T+KTI +S
Sbjct: 3 PSQQHLPKLCPKRLFLFFTPFLLFSLYYILTTIKTITIS 41
>At2g22840.1 68415.m02712 expressed protein identical to
transcription activator GRL1 [Arabidopsis thaliana]
GI:21539880 (unpublished); supporting cDNA
gi|21539879|gb|AY102634.1|
Length = 530
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 275 NSLMESPKYGSTPSGQVQVQTSV*LPNQN 189
NS SPK+GS+P+G +Q T L N +
Sbjct: 466 NSTTNSPKFGSSPTGVLQKSTFGSLSNSS 494
>At5g51750.1 68418.m06417 subtilase family protein similar to
subtilisin-like protease GI:3687307 from [Lycopersicon
esculentum]
Length = 780
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = -3
Query: 252 IRVDSVWTGTGADLSVTSEPERRGF*LLAAGTKVNTAFLATVVSL 118
+ + + WTG A S++S+P R F +L +GT ++ ++ V +L
Sbjct: 529 VNILAAWTGDMAPSSLSSDPRRVKFNIL-SGTSMSCPHVSGVAAL 572
>At1g12610.1 68414.m01465 DRE-binding protein, putative /
CRT/DRE-binding factor, putative similar to DREB1A
GI:3738224 from [Arabidopsis thaliana] and to
transcriptional activator CBF1 GI:1899058 from
[Arabidopsis thaliana
Length = 209
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 157 GSGCEKLKSSPFWFGSYTEVCT 222
GSG E+ SS + FG Y EV T
Sbjct: 144 GSGSEERNSSSYGFGDYEEVST 165
>At5g41590.1 68418.m05053 hypothetical protein contains Pfam profile
PF04525: Protein of unknown function (DUF567)
Length = 221
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 37 KFTILAVLLGLVALTYVNG-NKVKSYICQGYYGCEKC-CVHL 156
K IL+ ++A Y +K SYI +G Y C+ C VH+
Sbjct: 129 KMNILSTKSDILAYVYSGSFDKKNSYIIKGSYRCKSCKIVHV 170
>At2g05530.1 68415.m00585 glycine-rich protein
Length = 115
Score = 27.1 bits (57), Expect = 6.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 118 QGYYGCEKCCVHLGSGCE 171
+GY+GC +CC + G +
Sbjct: 93 RGYHGCSRCCSYAGEAVQ 110
>At2g05380.1 68415.m00566 glycine-rich protein (GRP3S) identical to
cDNA glycine-rich protein 3 short isoform (GRP3S)
GI:4206766
Length = 116
Score = 27.1 bits (57), Expect = 6.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 118 QGYYGCEKCCVHLGSGCE 171
+GY+GC +CC + G +
Sbjct: 94 KGYHGCSRCCSYAGEAVQ 111
>At4g37740.1 68417.m05343 expressed protein identical to
transcription activator GRL2 [Arabidopsis thaliana]
GI:21539882 (unpublished); supporting cDNA
gi|21539881|gb|AY102635.1|
Length = 535
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 275 NSLMESPKYGSTPSGQVQVQTSV*LPNQN 189
NS SP +GS+P+G +Q T L N +
Sbjct: 486 NSTTNSPTFGSSPTGVLQKSTFCSLSNNS 514
>At4g13235.1 68417.m02058 hypothetical protein late embryogenesis
abundant protein -Picea glauca,PID:g1161171
Length = 129
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/48 (33%), Positives = 18/48 (37%)
Frame = +1
Query: 82 YVNGNKVKSYICQGYYGCEKCCVHLGSGCEKLKSSPFWFGSYTEVCTC 225
YV G K C Y C HLG CEKL + + TC
Sbjct: 48 YVAGECAKLPRCNKY--CVSNGFHLGGFCEKLSPQASYLSCVYVIMTC 93
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,779,952
Number of Sequences: 28952
Number of extensions: 194299
Number of successful extensions: 521
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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