Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L21
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.69 
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)          29   2.1  
SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         29   2.8  
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)              27   8.5  

>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1548

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 325  LAMCSVQHLNHSTSTPSCPVRLTFTKPHFET 417
            L+ CS+Q L  +T T   P+R++F++PH  T
Sbjct: 1421 LSTCSLQSLTDNT-TSERPIRISFSEPHLHT 1450


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +3

Query: 39   TGYYPLMT-SYYFPF--AQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKK 209
            T Y P  T S Y      Q+P+N++LH     +A+        T    L  GKF+S G+ 
Sbjct: 4715 TSYQPAATDSLYISSQSTQKPNNHHLHRTCKADALEV----NVTLRGGLHAGKFKSVGRT 4770

Query: 210  IDFHD 224
             D H+
Sbjct: 4771 RDVHE 4775


>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +3

Query: 384 ALDFYQTALRDPAFYQLYXRIVGYINAFKHYLKPYPQEKLHFVGV*INDVVVEKLVTFFD 563
           AL +   ALR P   ++Y   +  ++ FK  LK YP    H   +       + L+ + D
Sbjct: 180 ALRYVLDALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASIPHFKEFPQSLIEYID 239

Query: 564 YCQ 572
           Y Q
Sbjct: 240 YGQ 242


>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
          Length = 129

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
 Frame = +1

Query: 304 NDLMKLSLAMCSVQHLN--HSTSTPSCPVRLTFTKP---HFETLHS-ISYXTGLWVTLTH 465
           ++L   +L   ++ HLN  HST T S    LT T     H    +S I++ T   +TLTH
Sbjct: 25  SNLTHSTLTHSNLTHLNLTHSTLTYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTH 84

Query: 466 SSIT*SLILKRNFISSAFKSMMLSLRN*SHS 558
            ++T S +       S      L+    +HS
Sbjct: 85  LTLTYSTLTHSTLTHSTLTHSTLTHSTLTHS 115



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +1

Query: 310 LMKLSLAMCSVQHLN--HSTSTPSCPVRLTFTKPHFETLHSISYXTGLWVTLTHSSIT*S 483
           L  L+L   ++ HL   +ST T S    LT T  H     +++Y T    TLTHS++T S
Sbjct: 52  LTHLTLTYSTLTHLTITYSTITHSTLTHLTLT--HL----TLTYSTLTHSTLTHSTLTHS 105

Query: 484 LILKRNFISSAFKSMMLSLRN*SH 555
            +       S      L+  N +H
Sbjct: 106 TLTHSTLTHSTITHSTLTHSNLTH 129


>SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -1

Query: 231 PFHRGNQFSCHTIRICLSVGTVRKSFQKCPRTVLL-RSSLRCVDC 100
           P H  NQ  C    IC+  G   KS  KCP    L  S  RC  C
Sbjct: 245 PCHEANQGGCEGRAICVYTGP-GKSICKCPPGYKLDESQARCTLC 288


>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
 Frame = +3

Query: 174  LQKGKFE-----SYGKKIDFHDEKAINFVGNYWQENADL--YEEEVTKDYQ 305
            L+KGKF+     S  K ID   E+   F+G+ W ++ DL  +++E  K+ Q
Sbjct: 1093 LEKGKFQVKQWCSNSKTIDKSCERYCTFLGHKWDKDRDLLTFKKEKIKETQ 1143


>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
          Length = 1069

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 189 FESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEIVAR 329
           FE Y    ++ DEKA  ++  Y ++ A  +  E     +RSY  + +
Sbjct: 138 FEIYVSLNEWQDEKAGQYLAVYLKDEAKAFYHEQEDSVRRSYRALCK 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,734,737
Number of Sequences: 59808
Number of extensions: 366440
Number of successful extensions: 1022
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)