Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L18
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|...    27   1.2  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   3.7  

>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 160

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +1

Query: 52  ILFLKKNIHSLIHLNYDYILK 114
           +LF+KK+I+SL  LN D ILK
Sbjct: 100 LLFMKKDINSLQTLNPDLILK 120


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 387  LSKFCEKRASYF-MTIIIQDVRFYNLDVLYSKVCCLKYFSPTVN 259
            +++ C+ +  YF +T I   +R+ +    Y+  C L  F  + N
Sbjct: 1969 MNRSCDSKCRYFLLTAIANQLRYPSSHTYYASCCFLYLFKSSSN 2012


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,859,345
Number of Sequences: 5004
Number of extensions: 34663
Number of successful extensions: 75
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)