Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L18
         (502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21876| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_6731| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.2  
SB_19681| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  

>SB_21876| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 67  KNIHSLI-HLNYDYILKLNHISQQNALKLMSYLKTGAIAVSVAQKRDNSENR 219
           K +H+++ H NYD ILKL  +     +     +K+G  +  +  K  +S NR
Sbjct: 619 KELHAILGHCNYDDILKLEAVVDGMKVSGKGSVKSGDCSTCILGKLADSRNR 670


>SB_6731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 67  KNIHSLI-HLNYDYILKLNHISQQNALKLMSYLKTGAIAVSVAQKRDNSENR 219
           K +H+++ H NYD ILKL  +     +     +K+G  +  +  K  +S NR
Sbjct: 110 KELHAILGHCNYDDILKLEAVVDGMKVSGKGSVKSGDCSTCILGKLADSRNR 161


>SB_19681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 67  KNIHSLI-HLNYDYILKLNHISQQNALKLMSYLKTGAIAVSVAQKRDNSENR 219
           K  H+++ H NYD ILKL  +     +     +K+G  +  +  K  +S NR
Sbjct: 586 KEWHAILGHCNYDDILKLEAVVDGMKVSGKGSVKSGDCSTCILGKLADSRNR 637


>SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = -2

Query: 363 ASYFMTIIIQDVRFYNLDVLYSKVCCLKYFSPTVNTIDLKVNILELFYPIF*IVTFLSNT 184
           ++Y++ I      FYNL+++Y  +  L+Y +  +N +     I E    +F     ++N 
Sbjct: 491 SNYYLVIHRLYYSFYNLNIVYMALLFLQYSNSCINIVVYAWRIPEFKQVLFRHKPVVANV 550

Query: 183 YG 178
            G
Sbjct: 551 QG 552


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,181,664
Number of Sequences: 59808
Number of extensions: 225614
Number of successful extensions: 443
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)