Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L18
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67738-5|CAA91547.1|  484|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z67735-4|CAA91533.1|  484|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z72502-13|CAA96586.2|  439|Caenorhabditis elegans Hypothetical p...    27   5.8  

>Z67738-5|CAA91547.1|  484|Caenorhabditis elegans Hypothetical
           protein W03G11.4 protein.
          Length = 484

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 321 YNLDVLYSKVCCLKYFSPTVNTIDLKVNILELFYPI 214
           Y+  V+   +CC  Y+S    +I + +NIL  FY +
Sbjct: 444 YDARVIIPPLCCSSYYSHL--SISISINILTFFYVV 477


>Z67735-4|CAA91533.1|  484|Caenorhabditis elegans Hypothetical
           protein W03G11.4 protein.
          Length = 484

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 321 YNLDVLYSKVCCLKYFSPTVNTIDLKVNILELFYPI 214
           Y+  V+   +CC  Y+S    +I + +NIL  FY +
Sbjct: 444 YDARVIIPPLCCSSYYSHL--SISISINILTFFYVV 477


>Z72502-13|CAA96586.2|  439|Caenorhabditis elegans Hypothetical
           protein C08B6.3 protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +1

Query: 34  AKYLINILFLKK-NIHSLIHLNYDYILKLNHISQQNALKLMSYLKTGAIAVSVAQKRDNS 210
           AK+L+    ++   +  + H  Y YI    HI + ++  L  Y++TG + V+  Q+R++ 
Sbjct: 188 AKWLLLAEIIEHYKLQGMTHF-YFYIF---HIDEYSSAMLNDYVRTGEVEVTYLQERNDR 243

Query: 211 E 213
           E
Sbjct: 244 E 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,221,246
Number of Sequences: 27780
Number of extensions: 191174
Number of successful extensions: 418
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)