Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_L17
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 40 2e-04
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 31 0.086
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 31 0.086
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 31 0.15
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 29 0.61
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 28 1.1
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2... 27 1.4
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 27 2.5
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 26 4.3
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 25 9.9
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 39.9 bits (89), Expect = 2e-04
Identities = 35/135 (25%), Positives = 49/135 (36%), Gaps = 9/135 (6%)
Frame = +1
Query: 160 DFXXXXXXXXXXXXXXHPLDTLKVHIQSGRG-SP-----LECTKAIFKGGSLSNAYRGVW 321
DF P D +KV +QS SP L+C K I K L+ Y+G
Sbjct: 20 DFLAGVSGGVAQVLVGQPFDCVKVRLQSQSNVSPIYNNALDCVKKISKNEGLAAFYKGTV 79
Query: 322 APLGGIAAINAMVFGAYGNTRRAMP---NPDSLXXXXXXXXXXXXLQSFACAPVELVKTR 492
PL GI ++ F + +R P ++ SF PVE V+ R
Sbjct: 80 LPLLGIGFCVSIQFTTFEYCKRFFSRDGTPVTMPQYYVSGAISGLANSFLVGPVEHVRIR 139
Query: 493 QQLAKPSERMPSGAW 537
Q+ + G W
Sbjct: 140 LQIQTGKNVLYHGPW 154
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 262 ECTKAIFKGGSLSNAYRGVWAPLGGIAAINAMVFGAY 372
+C K I+ L YRG L A NA+ F Y
Sbjct: 256 QCAKGIYTKAGLRGFYRGFVPVLVRAAPANAVTFYVY 292
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 31.5 bits (68), Expect = 0.086
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -2
Query: 504 CELLTSFNQLDRCTRKAL*CPCNCSSGCVSRQRVRVRHCSTSIPISSKHHSVYCRYTS*R 325
C ++ FN RC ++ C C + R RV S S P+ + H Y R T+ R
Sbjct: 251 CLPISVFNT-HRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIR-TNYR 308
Query: 324 CP 319
CP
Sbjct: 309 CP 310
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 31.5 bits (68), Expect = 0.086
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Frame = +1
Query: 208 HPLDTLKVHIQSGRGSPLECTKAIFKGGSLSNAYRGVWAPLGGIAAINAMVFGAYGNT-R 384
HP+DT+ VH Q+ K FK L YRG+ L I + Y R
Sbjct: 21 HPIDTITVHKQT-------IGKFSFKTMPLKAYYRGLPISLTLITPATCLYLSTYVEAKR 73
Query: 385 RAMPN-PDSLXXXXXXXXXXXXLQSFACAPVELVKTRQQLAK 507
R P+ + + SF P+E++K R Q+++
Sbjct: 74 RFKPSVGEGAILYSICGMTAEVVSSFVWTPLEVIKARTQISQ 115
Score = 30.7 bits (66), Expect = 0.15
Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 4/105 (3%)
Frame = +1
Query: 211 PLDTLKVHIQ-SGRGSPLECTKAIFKGGSLSNAYRGVWAPLGGIAAINAMVFGAYGNTRR 387
PL+ +K Q S +GS + + + L YRG W + + Y +++
Sbjct: 103 PLEVIKARTQISQKGSVINTISTLARSEGLKGFYRGYWMGVAIYLPTTVSWWVCYEESKK 162
Query: 388 AM---PNPDSLXXXXXXXXXXXXLQSFACAPVELVKTRQQLAKPS 513
+ N D + + P+++VKTR Q+A S
Sbjct: 163 YLQKQSNWDISVIAPICSALGTVVATTISTPLDIVKTRYQVATSS 207
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 30.7 bits (66), Expect = 0.15
Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 10/114 (8%)
Frame = +1
Query: 208 HPLDTLKVHIQSGRGSP-----LECTKAIFKGGSLSNAYRGVWAPLGGIAAINAMVFGA- 369
+PLD +K +Q G +C K I K YRG+ P+ A A+ F +
Sbjct: 27 YPLDVVKTRMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRGILPPILMEAPKRALKFASN 86
Query: 370 --YGNT-RRAMPNPDSL-XXXXXXXXXXXXLQSFACAPVELVKTRQQLAKPSER 519
Y R+ DS ++F P EL+K R Q K + +
Sbjct: 87 DTYSKLWRKVFKRKDSSPALSILTGSCAGFTETFVVVPFELMKIRLQDVKNASK 140
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 28.7 bits (61), Expect = 0.61
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 64 GRYANKHIGGDEFKNDDYS 8
GR A + GGD++ N+DYS
Sbjct: 115 GRSAKSYYGGDDYDNEDYS 133
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 1.1
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Frame = +1
Query: 208 HPLDTLKVHIQSGR-----GSPLECTKAIF-KGGSLSNAYRGVWAPLGGIAAINAMVFGA 369
H LDT+K Q+ ++C I + G Y GV L G A+ F +
Sbjct: 34 HSLDTVKTRQQAALYTNKYNGMVKCYSTILCEEGVFHGLYSGVCPMLIGSLPATALFFSS 93
Query: 370 YGNTRR-AMPN---PDSLXXXXXXXXXXXXLQSFACAPVELVKTRQQL 501
Y T+R M N P++L S P E++KTR QL
Sbjct: 94 YEYTKRHLMSNYNLPETL-CFLLAGFVGDLFASVVYVPSEVLKTRLQL 140
>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 27.5 bits (58), Expect = 1.4
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +1
Query: 208 HPLDTLKVHIQSGRGSPLECTKAIFK-----GGSLSNAYRGVWAPLGGIAAINAMVFGAY 372
HPLD K+ +Q+ + +FK GS+ + Y G+ + G AA F Y
Sbjct: 19 HPLDLAKIQMQASMNQDSKSLFQVFKSNIGSNGSIRSLYHGLSINVLGSAASWGAYFCIY 78
Query: 373 GNTRRAM 393
++R +
Sbjct: 79 DFSKRVV 85
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 26.6 bits (56), Expect = 2.5
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 322 PIHLDTHSTVILL*R*L*CIPKDFLSQTVYALLMYLKDVQLIYPHNLQCI 173
PI + TH + LL R L +P S Y LL+ +++ PH CI
Sbjct: 311 PIGIQTHEVIKLLAR-LFFLPS---SANFYLLLIQFNTERILLPHEQPCI 356
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 233 IYSLGEEVLWNALKLSSKEDHCRMRIEVYG 322
+ +LG EV W++ + S +DH I G
Sbjct: 66 LVALGAEVTWSSCNIYSTQDHAAAAIAATG 95
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 117 DTSH*SLAACNYGNGFYSWMHWRLCGYISWTSFRYIKSAYTV 242
+T+ S + + G + + HW GY+ W ++I+ +YT+
Sbjct: 323 ETATQSASGISQGILYAMFKHWGQDGYLEW--LKHIRYSYTL 362
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,940
Number of Sequences: 5004
Number of extensions: 48798
Number of successful extensions: 117
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -