Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_L17
(556 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 60 2e-09
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 39 0.003
SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.27
SB_37977| Best HMM Match : PP2C (HMM E-Value=8.6e-08) 30 1.1
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32) 29 3.4
SB_37164| Best HMM Match : Prion_octapep (HMM E-Value=9.2) 28 5.9
SB_47365| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_45040| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/87 (33%), Positives = 44/87 (50%)
Frame = +1
Query: 262 ECTKAIFKGGSLSNAYRGVWAPLGGIAAINAMVFGAYGNTRRAMPNPDSLXXXXXXXXXX 441
+C K I K S+ Y+G+ +PL G+ INA++FG G T R + N
Sbjct: 196 DCFKQIIKRESVLGLYKGMASPLAGLGLINAIIFGVQGETLRRL-NGSGTMAQAISGAIA 254
Query: 442 XXLQSFACAPVELVKTRQQLAKPSERM 522
+QS C P+EL KTR Q+ +++
Sbjct: 255 GGVQSIVCCPMELAKTRVQVQGQGQKL 281
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 38.7 bits (86), Expect = 0.003
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Frame = +1
Query: 211 PLDTLKVHIQSGRGS-PLECTKAIFKGGSLSNAYRGVWAPLGGIAAINAMVFGAYGNTRR 387
PLDT+KV +Q+ G+ PL+ K + Y+G+ AP+ A + A+ F + +R
Sbjct: 89 PLDTIKVRLQASFGAGPLDMLARTVKTEGVRGLYKGMLAPVLVAAPVTAVSFYSLSIGKR 148
Query: 388 AM---PNPD-SLXXXXXXXXXXXXLQSFACAPVELVKTRQQLAKPS 513
PN + ++ SF AP E VK Q+ K S
Sbjct: 149 LQLSDPNKEPTMVQYYNAGVFCGVCVSFIYAPTERVKCLLQVQKES 194
>SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 35.5 bits (78), Expect = 0.029
Identities = 32/127 (25%), Positives = 43/127 (33%), Gaps = 11/127 (8%)
Frame = +1
Query: 151 MAMDFXXXXXXXXXXXXXXHPLDTLKVHIQ---SGRGSPLECTKAIFKGGSLSNAYRGVW 321
MA DF P DT+KV +Q S + L+C FK Y G
Sbjct: 9 MATDFTAGAMGGTACVFAGQPFDTIKVKMQTFPSMSKNALDCGIKTFKQEGFKGLYAGTI 68
Query: 322 APLGGIAAINAMVFGAYGN--------TRRAMPNPDSLXXXXXXXXXXXXLQSFACAPVE 477
L A N+ +F YG T + + ++ SF P E
Sbjct: 69 PSLAANIAENSFLFLFYGQCLSLIKTLTGKKHESELTIFHNACAGSGAAFFMSFVLCPAE 128
Query: 478 LVKTRQQ 498
L+K R Q
Sbjct: 129 LIKCRLQ 135
>SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 313
Score = 32.3 bits (70), Expect = 0.27
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Frame = +1
Query: 208 HPLDTLKVHIQS-GRGSP---------LECTKAIFKGGSLSNAYRGVWAPLGGIAAINAM 357
HPLDT+KV +Q+ R P +C + Y+G+ AP+ G+ I A+
Sbjct: 45 HPLDTIKVRLQTMPRPKPGEKPMFTGTFDCAMKTIRNEGFFGLYKGMAAPITGVTPIFAI 104
Query: 358 VFGAYGNTRRAM---PNPD 405
F + ++ PN D
Sbjct: 105 CFWGFNMGKKLQMKDPNAD 123
>SB_37977| Best HMM Match : PP2C (HMM E-Value=8.6e-08)
Length = 662
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 217 DTLKVHIQSGRGSPLECTKAI 279
++L VH+ GRG L CTKA+
Sbjct: 262 NSLDVHVSEGRGDRLSCTKAV 282
>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
Length = 905
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 402 GLADDSRNRWSSCRGTT 452
G+ +DSRNRWS C T
Sbjct: 635 GVDEDSRNRWSGCSAVT 651
>SB_37164| Best HMM Match : Prion_octapep (HMM E-Value=9.2)
Length = 207
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 318 MGTFRRYSGNKRYG-VWSLWEYSSSNA*PGLADDSRNRWSS 437
MGT Y + +G W L E S + GL +RN W+S
Sbjct: 1 MGTSETYRRKQEHGDKWDLQEESGTWGQVGLTGGNRNMWTS 41
>SB_47365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 345 NKRYGVWSLWEYSSSNA*PGLADDSRNRWSSCRGTT 452
NK+Y + Y ++ PG N+WSSCR T
Sbjct: 139 NKKYYMRCTTSYCYRDSCPGDTVFKSNKWSSCRSMT 174
>SB_45040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 27.5 bits (58), Expect = 7.8
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = -2
Query: 552 VPGA--SPCAGRHTFTRFCELLTSFNQLDRCTRKAL*CPCNCSSGCVSRQRVRVRHCSTS 379
+PG PCAGR+ T CE L Q T L +C C R R R C+
Sbjct: 256 IPGVMGKPCAGRNVNTEKCE-LKPCPQDGGFTEWGL--FGDCDKSCGGGARTRKRECTNP 312
Query: 378 IP 373
P
Sbjct: 313 AP 314
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,703,154
Number of Sequences: 59808
Number of extensions: 390116
Number of successful extensions: 950
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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