Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L16
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces p...    34   0.013
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   4.7  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    25   6.2  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   8.1  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   8.1  

>SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 33

 Score = 34.3 bits (75), Expect = 0.013
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 161 LILTAATCWLFWLCAYMAQMNPLIGP 238
           LILT + C+L W   Y+AQ++PL  P
Sbjct: 3   LILTFSCCYLLWAITYLAQLHPLEAP 28


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 154 LDN-PSVRSLRSEERTYYSYDSPKHGENSYGDK 59
           +DN  SVR++ S+ +T  + ++P H  N Y  K
Sbjct: 1   MDNWNSVRNVSSDRQTSKTSENPPHTSNEYSGK 33


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +2

Query: 194 WLCAYMAQMNPLIGPRLDNETLIWISRTW 280
           W   Y+ +  P+IG   D+++L ++ + W
Sbjct: 519 WFDIYVKEYIPVIGNTKDHQSLTFLQKRW 547


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 23  KTSKKYVKMGFSFVPITIFTVFWGVIGI 106
           KT+KKY  +G+  VP+ + TV  G + +
Sbjct: 47  KTNKKYYILGYFLVPL-LLTVIAGFVRV 73


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/60 (25%), Positives = 31/60 (51%)
 Frame = -2

Query: 423 KNYFNIIMFNNLFIYSKRSIYYMDLLH*RGVFFSLDKFYTLVLFIGLPQVREIQMRVSLS 244
           +NY+++   NN+ ++ +    Y D+ H       + +F+TL+       +R+IQ  V L+
Sbjct: 41  RNYWDVFQANNVLLFPEEE-SYSDIFHVPQDV--MKEFFTLIESSSNQPLRQIQFFVLLA 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,865
Number of Sequences: 5004
Number of extensions: 50664
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)