Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L16
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0045 - 20220955-20221046,20221599-20221641,20221715-202217...    29   2.7  
05_01_0080 - 535443-535481,535569-535698,536483-536586,536686-53...    28   6.3  
07_01_0022 - 146406-146498,146616-146693,146967-147020,147729-14...    27   8.3  

>03_05_0045 -
           20220955-20221046,20221599-20221641,20221715-20221792,
           20222401-20222454,20222766-20222829,20222915-20222960,
           20223049-20223121,20223530-20223601,20224023-20224075,
           20224149-20224239,20226459-20226650
          Length = 285

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 336 GVFFSLDKFYTLVLFIGLPQVREIQMRV 253
           G FFSL   Y LV  + L Q+  IQ+RV
Sbjct: 47  GAFFSLSAAYALVSAVALVQLIRIQLRV 74


>05_01_0080 -
           535443-535481,535569-535698,536483-536586,536686-536903,
           537755-537762,538146-538183,538475-538668,539168-539296,
           539392-539481,539726-539839,540008-540154,540228-540293,
           540876-540987
          Length = 462

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 95  VIGIVCPFFAPKGPNRGIIQVILILTAATCWLFWLCAYMAQMN 223
           V+G+ C       P  G I + L +T +T  ++W  AY+ +++
Sbjct: 385 VLGLACGLLWGAVPLVGAIWIALFVTISTGLVYWYYAYLLKID 427


>07_01_0022 -
           146406-146498,146616-146693,146967-147020,147729-147792,
           147900-148018,148207-148278,148544-148596,148746-148836,
           148956-149099
          Length = 255

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -2

Query: 336 GVFFSLDKFYTLVLFIGLPQVREIQMRV 253
           G FFSL   Y LV  + L Q+  IQ RV
Sbjct: 31  GAFFSLSAAYALVSAVALIQLIRIQRRV 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,412,537
Number of Sequences: 37544
Number of extensions: 294109
Number of successful extensions: 574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)