Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L16
         (586 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58731| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_31361| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_7525| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-08)                28   6.4  

>SB_58731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 738

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 389 YLFIRNDRFITWTYYTKEVSSSLWTSFTPWSCSLGCPK 276
           ++FI    + TW YY   +++S+ T F PW  + G  K
Sbjct: 238 HIFINASEWRTW-YYITAIATSIDTKFDPWRQAEGAWK 274


>SB_31361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 334 CLLLFGQVLHLGPVHWVAPS 275
           C   F Q+LH G  HWVA S
Sbjct: 26  CREEFAQILHTGQCHWVAVS 45


>SB_7525| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-08)
          Length = 256

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -1

Query: 232 DEWVHLRHVSAQPE*PTCC-CS*YQYHLDN-PSVRSLRSEERTYYSYDSPKHGENS 71
           DEW  + H + Q     C  CS + +     P++   + +ER + S+D PKH E +
Sbjct: 95  DEWCRIIHSNQQLY---CMECSDFGHTRRKCPNIECRKCKERGHISFDCPKHDETT 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,308,236
Number of Sequences: 59808
Number of extensions: 352024
Number of successful extensions: 696
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)