Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L16
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   2.9  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   2.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.9  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   5.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   8.9  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 90  QNTVKIVMGTNEKPILTYFLDVF 22
           QN  KI+  TNEK I  Y + +F
Sbjct: 60  QNIFKIIKSTNEK-ITRYIIRMF 81


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 90  QNTVKIVMGTNEKPILTYFLDVF 22
           QN  KI+  TNEK I  Y + +F
Sbjct: 43  QNIFKIIKSTNEK-ITRYIIRMF 64


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 304 LGPVHWVAPSA*DPDESLIVKSGSDEWVH 218
           + PV+ +   A D  ++LIV   SDE  H
Sbjct: 197 MDPVNTIVYMADDKGDALIVYQNSDESFH 225


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 441 NLQIINKNYFNIIMFNNLFIYSKRSIYY 358
           N    N NY N   +NN +  + + +YY
Sbjct: 326 NYNNYNNNYNNYNNYNNNYNNNYKKLYY 353


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 390 LFIYSKRSIYYMDL 349
           L++Y++ S YY DL
Sbjct: 292 LYVYAQESDYYPDL 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,119
Number of Sequences: 438
Number of extensions: 3935
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)