Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L16
         (586 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26710.2 68417.m03850 ATP synthase subunit H family protein c...    52   3e-07
At4g26710.1 68417.m03849 ATP synthase subunit H family protein c...    52   3e-07
At5g55290.1 68418.m06890 ATP synthase subunit H family protein c...    51   5e-07
At4g21790.1 68417.m03152 transmembrane protein-related (TOM1) co...    29   3.0  
At1g11230.1 68414.m01286 hypothetical protein contains similarit...    28   5.3  
At1g74055.1 68414.m08577 expressed protein                             27   7.0  
At3g63310.1 68416.m07121 expressed protein low similarity to N-m...    27   9.2  

>At4g26710.2 68417.m03850 ATP synthase subunit H family protein
           contains similarity to Swiss-Prot:O15342 Vacuolar ATP
           synthase subunit H (V-ATPase H subunit) (Vacuolar proton
           pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase 9.2
           kDa membrane accessory protein) [Homo sapiens]
          Length = 70

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = +2

Query: 56  SFVPITIFTVFWGVIGIVCPFFA-PKGPNRGIIQVILILTAATC-WLFWLCAYMAQMNPL 229
           +FV  ++     G+I  +C      KGP+  ++ + L++TA  C W+ W   Y+AQMNPL
Sbjct: 2   AFVVTSLIFAVVGIIASICTRICFNKGPSTNLLHLTLVITATVCCWMMWAIVYIAQMNPL 61

Query: 230 IGPRL 244
           I P L
Sbjct: 62  IVPIL 66


>At4g26710.1 68417.m03849 ATP synthase subunit H family protein
           contains similarity to Swiss-Prot:O15342 Vacuolar ATP
           synthase subunit H (V-ATPase H subunit) (Vacuolar proton
           pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase 9.2
           kDa membrane accessory protein) [Homo sapiens]
          Length = 70

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = +2

Query: 56  SFVPITIFTVFWGVIGIVCPFFA-PKGPNRGIIQVILILTAATC-WLFWLCAYMAQMNPL 229
           +FV  ++     G+I  +C      KGP+  ++ + L++TA  C W+ W   Y+AQMNPL
Sbjct: 2   AFVVTSLIFAVVGIIASICTRICFNKGPSTNLLHLTLVITATVCCWMMWAIVYIAQMNPL 61

Query: 230 IGPRL 244
           I P L
Sbjct: 62  IVPIL 66


>At5g55290.1 68418.m06890 ATP synthase subunit H family protein
           contains weak similarity to Vacuolar ATP synthase
           subunit H (EC 3.6.3.14) (V-ATPase H subunit) (Vacuolar
           proton pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase
           9.2 kDa membrane accessory protein) (Swiss-Prot:P81103)
           [Bos taurus]; contains Pfam profile PF05493: ATP
           synthase subunit H
          Length = 70

 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
 Frame = +2

Query: 59  FVPITIFTVFWGVIGIVCP-FFAPKGPNRGIIQVILILTAATC-WLFWLCAYMAQMNPLI 232
           F+  T+  V  G+I  +C      +GP+  ++ + L++TA  C W+ W   Y+AQMNPLI
Sbjct: 3   FLITTLIFVVVGIIASLCVRICCNRGPSTNLLHLTLVITATVCCWMMWAIVYIAQMNPLI 62

Query: 233 GPRL 244
            P L
Sbjct: 63  VPIL 66


>At4g21790.1 68417.m03152 transmembrane protein-related (TOM1)
           contains some similarity to transmembrane protein TOM3
           GI:15425641 from [Arabidopsis thaliana]; identical to
           cDNA TOM1 GI:9967414
          Length = 291

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 336 GVFFSLDKFYTLVLFIGLPQVREIQMRV 253
           G+FF+L   Y LV  + L Q+  IQMRV
Sbjct: 36  GIFFALCGAYALVSAVALVQLIRIQMRV 63


>At1g11230.1 68414.m01286 hypothetical protein contains similarity
           to cotton fiber expressed protein 1 [Gossypium hirsutum]
           gi|3264828|gb|AAC33276
          Length = 301

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 419 IISTLLCLIIYLFIRNDRFITWTYYTKEVSSSLWTSFTPW 300
           +IST +   + +F++   F+  T Y     S+LW+SF PW
Sbjct: 11  LISTGIITAMSMFLKV--FLPVTLYFSLSFSTLWSSFLPW 48


>At1g74055.1 68414.m08577 expressed protein
          Length = 144

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
 Frame = +2

Query: 131 GPNRGIIQVILILTAATCWLFWLCA-------YMAQMNPLIGPRLDNETLIWISRTW 280
           GP   +I V++IL   +C+L   CA        +A++NPL   +     L W+ R W
Sbjct: 53  GPFFAVISVLIILAVLSCFLGRFCARSRQRTGLVAEVNPLEMIK-SGGLLGWLRRKW 108


>At3g63310.1 68416.m07121 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 239

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +2

Query: 56  SFVPITIFTVFWG-VIGIVCPFFAPKGPNRGIIQVILILTAATCWLFWLCAYMAQMNPLI 232
           +++ + IFTV     +G+ C F + K     +I   +++ + T + FW        N  +
Sbjct: 95  NYLLLGIFTVALAFAVGLTCAFTSGKVILESVILTAVVVISLTLYTFWAAKRGHDFN-FL 153

Query: 233 GPRLDNETLI 262
           GP L    ++
Sbjct: 154 GPFLFGAVIV 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,193,407
Number of Sequences: 28952
Number of extensions: 253651
Number of successful extensions: 534
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)