Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_L15
(473 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.28
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_46713| Best HMM Match : GrpE (HMM E-Value=1.7) 30 0.85
SB_33903| Best HMM Match : GrpE (HMM E-Value=1.7) 30 0.85
SB_55865| Best HMM Match : RRS1 (HMM E-Value=6.4e-07) 30 1.1
SB_44856| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_32062| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_55514| Best HMM Match : RVT_1 (HMM E-Value=0.014) 28 4.5
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22) 27 7.9
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08) 27 7.9
>SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1111
Score = 31.9 bits (69), Expect = 0.28
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 435 DPSTNPNXLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 301
D S NP +P E+ Y + HE + E ++ + R DISTW
Sbjct: 44 DESLNP--VPNEEEAAEYEQHLHEENEQEEELLRRFSREQDISTW 86
>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2529
Score = 30.7 bits (66), Expect = 0.65
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 435 DPSTNPNXLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 301
D S +P +P E+ Y + HE + E ++ + R DISTW
Sbjct: 2404 DESLDP--VPNEEEAAEYKQQLHEENEQEEELLRRFSREQDISTW 2446
>SB_46713| Best HMM Match : GrpE (HMM E-Value=1.7)
Length = 420
Score = 30.3 bits (65), Expect = 0.85
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 435 DPSTNPNXLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 301
D S +P +P E+ Y + HE + E ++ + R DISTW
Sbjct: 234 DESLDP--VPNEEEAAEYEQQLHEENEQEEELLRRFSREQDISTW 276
>SB_33903| Best HMM Match : GrpE (HMM E-Value=1.7)
Length = 227
Score = 30.3 bits (65), Expect = 0.85
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 435 DPSTNPNXLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 301
D S +P +P E+ Y + HE + E ++ + R DISTW
Sbjct: 41 DESLDP--VPNEEEAAEYEQQLHEENEQEEELLRRFSREQDISTW 83
>SB_55865| Best HMM Match : RRS1 (HMM E-Value=6.4e-07)
Length = 424
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 435 DPSTNPNXLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 301
D S +P +P E+ Y + HE + E ++ + R DISTW
Sbjct: 41 DESLDP--VPNGEEAAEYEQQLHEENEQEEELLRRFSREQDISTW 83
>SB_44856| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 435 DPSTNPNXLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTW 301
D S +P +P E+ Y + HE + E ++ + R DISTW
Sbjct: 9 DESLDP--VPNGEEAAEYEQQLHEENEQEEELLRRFSREQDISTW 51
>SB_32062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = -3
Query: 444 AIKDPSTNPNXLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTWTLAELNE 280
A++DPS NP+ L + + + ++ H P + I + A+ S + L+E
Sbjct: 10 AMQDPSQNPHELKKSKDKEKAYRRSYTHAKPPYSYISLITMAIQQSPNKMLTLSE 64
>SB_55514| Best HMM Match : RVT_1 (HMM E-Value=0.014)
Length = 684
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -3
Query: 465 TMEELDEAIKDPSTNPNXLPAITESYRYLKSTHEHGNKPENSIKVYVRAMD 313
T+EELD +K T N PA T LK+T ++G + VY D
Sbjct: 453 TLEELDPIVKSKLTEHNLDPATT----LLKTTVKNGADGMGDVSVYKETGD 499
>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
Length = 1249
Score = 27.1 bits (57), Expect = 7.9
Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Frame = -3
Query: 465 TMEELDEAIKDPSTNPNXLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTWTLAEL 286
T+ + + PST ++ ++Y + +TH+ + +S+ + I+T L
Sbjct: 397 TIANVSSILPSPSTVYMGTTSVPDNYTEVTTTHDAASSTTSSVPDIYMTLSITTGVYTSL 456
Query: 285 NE-AIANPATNPELIHYLETARTKLTSESEFQNKETISIVT 166
+ + N P I + T TS E + +S++T
Sbjct: 457 SSPGLKNTTFTPSEI-VSPSISTLHTSTVELSSTGNVSMLT 496
>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
Length = 1213
Score = 27.1 bits (57), Expect = 7.9
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Frame = -3
Query: 456 ELDEAIKDPSTNPNXLPAITESYRYLKSTHEHGNKPENSI-KVYVRAMDISTWTLAELNE 280
E + +K T N LP + + K+ G KP ++ + + M+ E E
Sbjct: 511 ERESRMKKGGTE-NKLPERKKKFN--KTASLVGQKPHSAAGEDHWSGMEWEEGGAMEKGE 567
Query: 279 AIANPATNPELIHYLETARTKLTSESEFQNKETISI-VTKVGLVHK 145
A+ T + ++ +T + S ++F+ KET+ V K GL K
Sbjct: 568 AVEKTLTKLSNPGFTQSMKTAMQSVNDFEEKETVETGVNKRGLDRK 613
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,298,282
Number of Sequences: 59808
Number of extensions: 193106
Number of successful extensions: 494
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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