Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L15
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64857-10|AAC25860.1|  265|Caenorhabditis elegans Hypothetical p...    31   0.32 
Z70783-9|CAA94857.2|  455|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascula...    28   3.0  
AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical ...    27   9.1  

>U64857-10|AAC25860.1|  265|Caenorhabditis elegans Hypothetical
           protein C37C3.3 protein.
          Length = 265

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 25/111 (22%), Positives = 47/111 (42%)
 Frame = -3

Query: 465 TMEELDEAIKDPSTNPNXLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTWTLAEL 286
           T+E   E +++ STN   L  +  +   LK+   H N   + ++  +  +D       E+
Sbjct: 134 TLEHQRETLENASTNAEVLTVMKLASDALKAV--HNNMDSDQVRDMMDNIDEQREVAKEI 191

Query: 285 NEAIANPATNPELIHYLETARTKLTSESEFQNKETISIVTKVGLVHKVPNL 133
            +AI+NP  N   I   +  R  +  E E  +K+ +        +   PN+
Sbjct: 192 ADAISNPGFN-NAIDEADLLRELVDLEQEALDKDLLDARAPPVTLPDTPNI 241


>Z70783-9|CAA94857.2|  455|Caenorhabditis elegans Hypothetical
           protein ZK856.9 protein.
          Length = 455

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 22/71 (30%), Positives = 30/71 (42%)
 Frame = -3

Query: 459 EELDEAIKDPSTNPNXLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTWTLAELNE 280
           +E  E + D    P  +P IT  +     + E    PE+ IK Y R   I      E NE
Sbjct: 16  QEDGEILDDDDDVPTEIPNITSEFLVNYPSSEDEKSPEDVIKAYKR--KIENQKNVE-NE 72

Query: 279 AIANPATNPEL 247
               PA +P+L
Sbjct: 73  ESVIPAIDPKL 83


>AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 2
           protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 212 HRNLSFKIRRQSALLQKWVLYTRCQTCNQSILMKYLKKV 96
           H  + +KIR Q A+ +   LY   +  N   L+KYL+K+
Sbjct: 59  HSLIEYKIRLQVAVKRYGFLYVITEYINGGDLLKYLRKL 97


>AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical
           protein Y50D4C.5 protein.
          Length = 540

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 336 KVYVRAMDISTWTLAELNEAIANPATNP--ELIHYLETARTKLTSESEFQN 190
           K+  RAMDI    +A L+E + NP+ +   E+I   E  R   +   E Q+
Sbjct: 439 KLRTRAMDIDQQRIALLDEKLDNPSVDDVREIIFLREIMRRVWSINRELQD 489


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,571,333
Number of Sequences: 27780
Number of extensions: 156179
Number of successful extensions: 458
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)