Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L14
         (551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0012 - 7346282-7347136,7347234-7347593                           27   10.0 
04_03_0314 - 14238620-14240128                                         27   10.0 

>11_02_0012 - 7346282-7347136,7347234-7347593
          Length = 404

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = -2

Query: 505 VVTTSREGR--AATTRCSMD*ACRRLFCREATQAVHFFAFFLGEGALPXALF 356
           VV  + EG   AA T C+M   C  L       A H FAFF+ E      LF
Sbjct: 342 VVEVNEEGTEAAAATACTMKFLCLTLTSPVDFVADHPFAFFVVEEKSDAVLF 393


>04_03_0314 - 14238620-14240128
          Length = 502

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 364 LKAKPLHPRRMRRSEPPVS 420
           L  +P+HPRR+R   PP S
Sbjct: 14  LSPQPIHPRRVRLPNPPPS 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,581,456
Number of Sequences: 37544
Number of extensions: 167493
Number of successful extensions: 555
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)