Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L14
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24267.1 68414.m03062 expressed protein                             28   4.8  
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)...    27   6.3  
At3g08030.2 68416.m00981 expressed protein contains Pfam profile...    27   8.3  
At3g08030.1 68416.m00980 expressed protein contains Pfam profile...    27   8.3  
At2g01810.1 68415.m00111 PHD finger family protein contains Pfam...    27   8.3  

>At1g24267.1 68414.m03062 expressed protein 
          Length = 343

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 310 KMMKRVNQRVRSQKCQTTLKAKPLHPRRMRRSEPPVSPRDRRA 438
           K ++  N+ + S      L+A P+ P     S PP SPR+ ++
Sbjct: 230 KRIQESNKALPSTSAVPALEAAPMTPSSRTLSLPPASPRESQS 272


>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
           family protein low similarity to Swift [Xenopus laevis]
           GI:14164561; contains Pfam profiles PF00583:
           acetyltransferase, GNAT family, PF00533: BRCA1 C
           Terminus (BRCT) domain
          Length = 991

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 50  SGGDNVITGVGKNTSRSIESRRDKTCTLGL*VPRCTCHIHSYTGFRT 190
           S G NVI+GV K  +++         +L     R +CH H Y   +T
Sbjct: 470 SAGGNVISGVNKGKAKTFRI----ALSLAHGSVRVSCHFHHYRSLKT 512


>At3g08030.2 68416.m00981 expressed protein contains Pfam profile
           PF04862: Protein of unknown function, DUF642
          Length = 323

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 21  DAKADELNVVQVETMSLQESVKIPVAVLKAGETRHARLDFEFPDAPVIFTLIQG 182
           DAK D    + VE  + ++++K+P   +  G  + A   F+  +A    T   G
Sbjct: 244 DAKNDCHGSMMVEAFAARDTLKVPHTSVGGGHVKTASFKFKAVEARTRITFFSG 297


>At3g08030.1 68416.m00980 expressed protein contains Pfam profile
           PF04862: Protein of unknown function, DUF642
          Length = 365

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 21  DAKADELNVVQVETMSLQESVKIPVAVLKAGETRHARLDFEFPDAPVIFTLIQG 182
           DAK D    + VE  + ++++K+P   +  G  + A   F+  +A    T   G
Sbjct: 286 DAKNDCHGSMMVEAFAARDTLKVPHTSVGGGHVKTASFKFKAVEARTRITFFSG 339


>At2g01810.1 68415.m00111 PHD finger family protein contains Pfam
           profile: PF00628: PHD-finger
          Length = 697

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 316 MKRVNQRVRSQKCQTTLKAKPLHPRRMRRSEPPVSPRD 429
           ++ +N RV+ QK +   K KP        + P +SP D
Sbjct: 448 LRTINSRVQEQKRKKKRKVKPQETSECTSTTPGLSPYD 485


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,240,609
Number of Sequences: 28952
Number of extensions: 128040
Number of successful extensions: 359
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)