Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L13
         (524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40200.1 68418.m04878 DegP protease, putative contains simila...    29   2.5  
At5g27230.1 68418.m03248 expressed protein  ; expression support...    28   4.4  
At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to...    28   4.4  
At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase fa...    28   4.4  
At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative (CH...    27   5.8  
At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative (CH...    27   5.8  
At5g34900.1 68418.m04114 Ulp1 protease family protein contains P...    27   5.8  
At4g22320.1 68417.m03227 expressed protein                             27   5.8  
At5g52920.1 68418.m06567 pyruvate kinase, putative similar to py...    27   7.7  
At3g57300.1 68416.m06378 transcriptional activator, putative sim...    27   7.7  

>At5g40200.1 68418.m04878 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 592

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 156 NVDDEYYKIGKDYDVEANIDXYTNKKAVEEFLKLYRI 266
           N +DEY K   DYD    +D  T K+A  + L  + I
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDILTTHCI 578


>At5g27230.1 68418.m03248 expressed protein  ; expression supported
           by MPSS
          Length = 948

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +3

Query: 90  VDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVEEFLK 254
           V A+ +E+++K L L  +  +     E+ K  KD+D+E   +    K+ VE+  K
Sbjct: 69  VKALELEKKEKELCLIDESMKAK-QSEFEKKEKDFDLEQKAEVEKRKREVEQLEK 122


>At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +3

Query: 33  ALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIG 185
           ++V S VV    Y F    V  +  E +KK+   F + DQ   DDE YK G
Sbjct: 306 SVVGSGVVIFGLYIFLLGKVRLMKEECEKKLPCRFNEDDQEEDDDEQYKKG 356


>At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|Q9Y2Q0, SP|O43520]; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1228

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -1

Query: 395 SESGTLVEG-FKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQ 249
           S SG ++E  +KV +++E   K   +   +  E+G++++L K  DS+ F+
Sbjct: 595 SGSGQIIEREYKVLNLLEFTSKRKRMTVIVRDEEGQILLLCKGADSIIFE 644


>At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 742

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 290 LIVLGKITDSVQFQEFFNSFLIGVVI 213
           ++V G ITD++     F +F++GV+I
Sbjct: 204 VLVCGFITDAIGIHSMFGAFVVGVLI 229


>At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 810

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 290 LIVLGKITDSVQFQEFFNSFLIGVVI 213
           ++V G ITD++     F +F++GV+I
Sbjct: 272 VLVCGFITDAIGIHSMFGAFVVGVLI 297


>At5g34900.1 68418.m04114 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At1g32840, At4g04010,
           At2g06430, At2g15140, At2g04980, At2g14130, At3g44500,
           At2g15190, At3g47260, At3g29210, At2g02210, At3g32900
          Length = 767

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +3

Query: 120 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANI-DXYTNKKAVEEFLKLYRIGYLPKYYEFS 296
           K+++L  DV ++ V+     IG   D ++ + D +TN    ++ L+L ++GY  K  E++
Sbjct: 287 KIVNLVNDVYEIEVNTI---IGNPEDFKSLVPDFHTNDTEFQQVLELVKMGYRLKKTEWN 343


>At4g22320.1 68417.m03227 expressed protein 
          Length = 238

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 84  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVEE 245
           K V    +E QKK ++  ++ D++  DD   KI +D  VE   D     K VEE
Sbjct: 115 KYVPIAVLEEQKKEITEIEEDDKIEEDD---KIDEDNKVEQE-DKVDEDKTVEE 164


>At5g52920.1 68418.m06567 pyruvate kinase, putative similar to
           pyruvate kinase isozyme G, chloroplast precursor
           [Nicotiana tabacum] SWISS-PROT:Q40546
          Length = 579

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 192 YDVEANIDXYTNKKAVEEFLKLYRIGYLPKYYEFS 296
           Y     I  +TN+K +++ L LY+ G  P Y EF+
Sbjct: 496 YRPSGTIYAFTNEKKIQQRLALYQ-GVCPIYMEFT 529


>At3g57300.1 68416.m06378 transcriptional activator, putative
           similar to transcriptional activator SRCAP [Homo
           sapiens] GI:5106572; contains Pfam profiles PF00271:
           Helicase conserved C-terminal domain, PF00176: SNF2
           family N-terminal domain
          Length = 1507

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 393 ARVHLNEGQFLYAYYIAVIQRNDTHGFV 476
           AR  L+EG  L  +Y+ ++++ DT+  V
Sbjct: 295 ARTILSEGGVLQVHYVKILEKGDTYEIV 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,821,152
Number of Sequences: 28952
Number of extensions: 209747
Number of successful extensions: 535
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)