Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L12
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    25   5.6  
SPAC4C5.01 |||haloacid dehalogenase-like hydrolase |Schizosaccha...    25   7.4  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   9.8  

>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = -2

Query: 476 RYERR*SPL----EDELGRQLQCKKSSGRSXSPL 387
           RYER  +PL     D+LG+QL+   + G+S  PL
Sbjct: 301 RYERGGTPLLASGRDKLGQQLKSVTNFGKSPVPL 334


>SPAC4C5.01 |||haloacid dehalogenase-like hydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +2

Query: 362 SQFGEFPWVVAXMNGRNFSYIGVGVLIHPQVVITAAHIVLNYKDF 496
           S     P   + +N  +   I +GV  HP  +I  AH+   ++ F
Sbjct: 88  SSLKPMPGAESLINNLSNHGIDIGVCTHPYAIIKTAHLKHIFEKF 132


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +2

Query: 335 LIGDKIGAASQFGEFPWVVAXMNGRN 412
           ++ DKIG+++  G FP + + M+ R+
Sbjct: 486 IVTDKIGSSATSGSFPVIKSLMDKRS 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,738,485
Number of Sequences: 5004
Number of extensions: 27496
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)