Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L12
         (552 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)                     46   2e-05
SB_11317| Best HMM Match : Trypsin (HMM E-Value=3e-08)                 39   0.002
SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)              39   0.002
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.002
SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.004
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)                     37   0.010
SB_9601| Best HMM Match : Trypsin (HMM E-Value=0)                      37   0.010
SB_33775| Best HMM Match : Trypsin (HMM E-Value=0.012)                 36   0.017
SB_10942| Best HMM Match : PDZ (HMM E-Value=2.3e-08)                   36   0.017
SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.022
SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.067
SB_45862| Best HMM Match : GMP_synt_C (HMM E-Value=0)                  34   0.089
SB_17803| Best HMM Match : SRCR (HMM E-Value=0)                        31   0.63 
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)           31   0.83 
SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)                      31   0.83 
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)                     29   1.9  
SB_50961| Best HMM Match : Trypsin (HMM E-Value=0)                     29   2.5  
SB_21673| Best HMM Match : Troponin (HMM E-Value=0.34)                 28   4.4  
SB_35844| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)           28   5.8  
SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)                     28   5.8  
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 968

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 23/57 (40%), Positives = 34/57 (59%)
 Frame = +2

Query: 353 GAASQFGEFPWVVAXMNGRNFSYIGVGVLIHPQVVITAAHIVLNYKDFPTTINVRAG 523
           G A++ G++PW     +   F + G G LIHPQ V+TA H V + +  PT +N+R G
Sbjct: 667 GTAAKQGDWPWQAQLRSTSGFPFCG-GSLIHPQWVLTATHCVSSRR--PTDLNIRLG 720



 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 407 RNFSYIGVGVLIHPQVVITAAHIVLNYKDFPTTINVRAGEVGYRDPDG 550
           R+ S+I  G L+ P  V+TAAH +      P +  V  GE     P+G
Sbjct: 87  RSGSFICGGSLVSPTWVVTAAHCIAGSSHTP-SYKVVTGEHIRNSPEG 133


>SB_11317| Best HMM Match : Trypsin (HMM E-Value=3e-08)
          Length = 153

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +2

Query: 353 GAASQFGEFPWVVAXMNGRNFSYIGVGVLIHPQVVITAAHIVLNYKDFPTTINVRAG 523
           G A+    +PW     +   F + G G L+HP+ V+TA+H +   K  P+++ +R G
Sbjct: 27  GTAAPKNAWPWQAQLRSASGFPFCG-GTLVHPRFVVTASHCI--DKKTPSSLRIRLG 80


>SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)
          Length = 1019

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = +2

Query: 353 GAASQFGEFPWVVAXMNGRNFSYIGVGVLIHPQVVITAAHIVLNYKDFPTTINVRAG 523
           GAA+  G++PW         F Y G G LIH   V+TAAH + + +  P  + VR G
Sbjct: 394 GAAANPGDWPWQAQLRTTTGFPYCG-GSLIHSNWVLTAAHCISSKR--PAEVVVRLG 447


>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 23/65 (35%), Positives = 33/65 (50%)
 Frame = +2

Query: 353 GAASQFGEFPWVVAXMNGRNFSYIGVGVLIHPQVVITAAHIVLNYKDFPTTINVRAGEVG 532
           G+ +  G +PW V  +      + G G L+ P+ VITAAH V++    P +I VR G   
Sbjct: 634 GSTAPPGAWPWQVMLIYNSGRQFCG-GTLVTPEWVITAAHCVVDKN--PASIQVRLGAQD 690

Query: 533 YRDPD 547
              PD
Sbjct: 691 RTSPD 695


>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 21/57 (36%), Positives = 28/57 (49%)
 Frame = +2

Query: 353 GAASQFGEFPWVVAXMNGRNFSYIGVGVLIHPQVVITAAHIVLNYKDFPTTINVRAG 523
           G  +  G +PW     +     + G G L+HPQ VITAAH V  Y+  P    +R G
Sbjct: 143 GTKAPPGAWPWQAMLRSNYGGQFCG-GTLVHPQWVITAAHCV--YRRGPNDFKIRMG 196


>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 636

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 24/60 (40%), Positives = 34/60 (56%)
 Frame = +2

Query: 353 GAASQFGEFPWVVAXMNGRNFSYIGVGVLIHPQVVITAAHIVLNYKDFPTTINVRAGEVG 532
           G+ +Q   +PW+V  +N  N  + G G L+ PQ V+TAAH V + KD P   N  A  +G
Sbjct: 355 GSDAQPNSWPWMVQ-INYNNGHHCG-GTLVSPQWVVTAAHCVDHVKD-PKNYNELAITLG 411


>SB_9601| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 285

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 353 GAASQFGEFPWVVAXMNGRNFSYIGVGVLIHPQVVITAAHIVLNY-KDFPTTINVRAGE 526
           G  ++ G+FPW +A +  R   Y G G L+H + V+T AH    Y  + P   NV  GE
Sbjct: 32  GDEAKAGQFPWQIALLFKRQ-QYCG-GALVHERWVVTGAHCFNPYTSEDPRDWNVTLGE 88


>SB_33775| Best HMM Match : Trypsin (HMM E-Value=0.012)
          Length = 115

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +2

Query: 353 GAASQFGEFPWVVAXMNGRNFSYIGVGVLIHPQVVITAAHIV 478
           G A++ G++PW         F Y G G LI PQ ++TA H V
Sbjct: 14  GTAAKHGDWPWQAQLRTTSGFPYCG-GSLIAPQWILTATHCV 54


>SB_10942| Best HMM Match : PDZ (HMM E-Value=2.3e-08)
          Length = 386

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 353 GAASQFGEFPWVVAXMNGRNFSYIGVGVLIHPQVVITAAHIV 478
           G A++   +PW         F Y G G LIHPQ ++TA H V
Sbjct: 57  GTAAKQNSWPWQAQLRTTSGFPYCG-GSLIHPQWILTATHCV 97


>SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 35.9 bits (79), Expect = 0.022
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +2

Query: 353 GAASQFGEFPWVVA-XMNGRNFSYIGVGVLIHPQVVITAAHIVLNYKDFPTTINVRAGEV 529
           GA ++ GE+PW V+  +N  +  +I  G +I P  V+TAAH V + +   + I +  GE 
Sbjct: 549 GANAEHGEWPWQVSMKLNSSSLPHICGGNVISPWWVLTAAHCVQDER--ASNIKLTMGEW 606

Query: 530 GYRDPDG 550
              + DG
Sbjct: 607 RLFNVDG 613


>SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 34.3 bits (75), Expect = 0.067
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = +2

Query: 293 RGCGYNNPNGIGFTLIGDKIGAASQFGEFPWVVAXMNGRNFSYIGVGVLIHPQVVITAAH 472
           +GCG    N     ++G   G  +Q G +PW  A +   N ++   G L+HP+ V+TA+H
Sbjct: 239 QGCG----NRYNSRIVG---GTTAQRGAWPWQ-AMLRYYNGNHFCGGTLVHPRWVVTASH 290

Query: 473 IV 478
            V
Sbjct: 291 CV 292


>SB_45862| Best HMM Match : GMP_synt_C (HMM E-Value=0)
          Length = 687

 Score = 33.9 bits (74), Expect = 0.089
 Identities = 24/57 (42%), Positives = 31/57 (54%)
 Frame = +2

Query: 353 GAASQFGEFPWVVAXMNGRNFSYIGVGVLIHPQVVITAAHIVLNYKDFPTTINVRAG 523
           G A++   +PW V+   G+  S  G G LI  + VITAAH V+ Y  FP    V AG
Sbjct: 480 GEAARPYSWPWQVSVSMGKLHS-CG-GALISSKWVITAAHCVIEY-PFPQVYEVIAG 533


>SB_17803| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1428

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 374  EFPWVVAXMNGRNFSYIGVGVLIHPQVVITAAH 472
            ++PW    +N R F +   GVLI  + VITAAH
Sbjct: 1098 DWPWQTMILNRRRFPFCS-GVLISARHVITAAH 1129


>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
          Length = 506

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 353 GAASQFGEFPWVVAXMNGRNFSYIGVGVLIHPQVVITAAHIVLN 484
           G  +    +PW     +     + G G LIHP+ V+TAAH + N
Sbjct: 263 GTEAPVNGWPWQAMLRSAGGSQFCG-GSLIHPEWVLTAAHCLEN 305


>SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 530

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 353 GAASQFGEFPWVVAXMNGRNFSYIGVGVLIHPQVVITAAHIVLN 484
           G  +    +PW     +     + G G LIHP+ V+TAAH + N
Sbjct: 223 GTEAPVNGWPWQAMLRSAGGSQFCG-GSLIHPEWVLTAAHCLEN 265


>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 696

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 377 FPWVVAXMNGRNFSYIGVGVLIHPQVVITAAHIVL 481
           +PW+ +   GR+  +     LI P   ITAAH V+
Sbjct: 337 WPWIASLRKGRSNYHTCGATLIRPGWAITAAHCVM 371


>SB_50961| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 1007

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +2

Query: 299 CGYNNPNGIGFTLIGDKIGAASQFGEFPWVVAXMNGRNFSYIGVGVLIHPQVVITAAHIV 478
           CG  N  G    ++G   G  ++  ++PW      G + + +  G LI+ + V+TAAH +
Sbjct: 424 CGVRNALG---RIVG---GQTAKVEDWPWQAGLKKGLDDTIVCGGSLINREWVVTAAHCI 477


>SB_21673| Best HMM Match : Troponin (HMM E-Value=0.34)
          Length = 337

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 470 ERR*SPLEDELGRQLQCKKSSGRSXSPLPMEIHRTETPPL 351
           ER+    EDEL +Q Q   SSG+   P+   I    +P +
Sbjct: 25  ERQQKEAEDELDKQFQVDDSSGKKKVPIGRSISSGASPSI 64


>SB_35844| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
          Length = 249

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 377 FPWVVAXMNGRNFSYIGV--GVLIHPQVVITAAHIVLNYKD 493
           +PW V  +  R+ S++    G LI  + V+TAAH V    D
Sbjct: 55  WPWQVHLLQSRDGSFLHKCGGALIDREWVVTAAHCVFQEPD 95


>SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 454

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +2

Query: 353 GAASQFGEFPWVVAXMNGRNFSYIGV--GVLIHPQVVITAAHIV--LNYKDFPTTI 508
           G  +  GE+PW    M      Y     G L+H   V+TA+H +  +  +D+ T I
Sbjct: 214 GNDAMHGEWPWQAMLMFQTPLGYKQFCGGALVHEDWVVTASHCINDIRPEDYKTHI 269


>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2644

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 431 GVLIHPQVVITAAHIVLNYK 490
           GVL+ P+ V+TAAH V N K
Sbjct: 126 GVLVGPKHVLTAAHCVANEK 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,310,760
Number of Sequences: 59808
Number of extensions: 224137
Number of successful extensions: 595
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)