Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L12
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    37   0.011
AY081844-1|AAL91661.1|  362|Caenorhabditis elegans heparan 6-O s...    31   0.42 
AC024755-9|AAF59640.2|  362|Caenorhabditis elegans Heparan sulph...    31   0.42 

>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 36.7 bits (81), Expect = 0.011
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +2

Query: 431 GVLIHPQVVITAAHIVLNYKDFPTTINVRAGEV 529
           GVLI P +VIT+AH V +  DF  T  V  G+V
Sbjct: 48  GVLIAPSIVITSAHCVFSGDDFAVTAKVTLGDV 80


>AY081844-1|AAL91661.1|  362|Caenorhabditis elegans heparan 6-O
           sulfotransferase HST-6 protein.
          Length = 362

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 455 VITAAHIVLNYKDFPTTINVRAGEVGYRDPD 547
           ++ AA IV  Y DFP  +N+R  E G+ D D
Sbjct: 26  ILFAASIVYFYIDFPLKVNMRTLEDGFHDDD 56


>AC024755-9|AAF59640.2|  362|Caenorhabditis elegans Heparan
           sulphotransferase protein 6 protein.
          Length = 362

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 455 VITAAHIVLNYKDFPTTINVRAGEVGYRDPD 547
           ++ AA IV  Y DFP  +N+R  E G+ D D
Sbjct: 26  ILFAASIVYFYIDFPLKVNMRTLEDGFHDDD 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,741,319
Number of Sequences: 27780
Number of extensions: 160478
Number of successful extensions: 344
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)