Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L11
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    31   0.096
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    28   0.68 
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    28   0.90 
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    27   1.6  
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    27   1.6  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.1  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    27   2.1  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    26   3.6  
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac...    26   3.6  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    26   3.6  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   4.8  
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.8  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    25   6.3  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   8.4  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   8.4  

>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 31.1 bits (67), Expect = 0.096
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +2

Query: 26  VMASKFKSEKVGIVGSGLIGRSWA--MLFASVGYQVTLFDVVEKQITDAIADI 178
           V +S FKS K+ IVG+G +G + A  +L + +  ++ + D+ +K+      D+
Sbjct: 13  VRSSSFKSIKIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAMDL 65


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = -3

Query: 237 SAFRFPLRSPSFSKVFNCTLISAIASVICFSTTSNKVTW---YPTEANNIAHDLPISPLP 67
           SA R     P F  + +  ++S + S    S   N ++    YP E  N ++DLPIS   
Sbjct: 361 SAGRTQFGDPDFLPLDHLDVVSKLLSKEFASQIRNNISLSKTYPWEHYNPSYDLPISHGT 420

Query: 66  TIPTFSDLNLEAMTTRSVCN 7
           T  +  D N  A++  S  N
Sbjct: 421 THVSTVDSNNLAVSITSTVN 440


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +2

Query: 272  LAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTI 385
            L  A  +   ++  +P  + L KK+F+N +NVV+++++
Sbjct: 1284 LTYAFNEEKTIRASLPTLICLSKKIFENAENVVENHSL 1321


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +2

Query: 38  KFKSEKVGIVGSGLIGRSWAMLFASVGYQVTLFDVV 145
           + + + +GI+G G IG   ++L  ++G  V  +D++
Sbjct: 192 EIRGKTLGIIGYGHIGSQLSVLAEAMGLHVVYYDIL 227


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 50  EKVGIVGSGLIGRSWAMLFASVGYQV 127
           ++VGI+G G IG+S+A     +G ++
Sbjct: 160 KRVGIIGMGAIGKSFAQKILPLGCEI 185


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
 Frame = -3

Query: 375 SSTTLSKFWNTFFLSSKFSGTHSCTKIASLTAIAKSQVPFTHWN---CSSAFRFPLRSPS 205
           SST LS   +    ++  + +   + + S TA + S  P T  N    +SA   PL S +
Sbjct: 320 SSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVN 379

Query: 204 FSKVFNCTLISAIASVICFSTTSNKVTWYPTEANNIAHDLPISPLPTIPTFSDLNLEAMT 25
            +   + T  S+       STTS  V+     + N +  LP S + + P  S  N    T
Sbjct: 380 ST---SATSASSTPLTSANSTTSTSVS-STAPSYNTSSVLPTSSVSSTP-LSSANSTTAT 434

Query: 24  TRS 16
           + S
Sbjct: 435 SAS 437


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 53  KVGIVGSGLIGRSWAMLFASVGYQVTLFD 139
           +VGI+G G +GR +A   +  G++V + D
Sbjct: 6   QVGIIGFGDMGRLYAEYISKAGWRVNVCD 34


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 50  EKVGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADI-KVQLKTLEKDGL 214
           +K+ ++G G+IG     +++ +G +VT+ + +        ADI K   + + K G+
Sbjct: 218 KKMTVLGGGIIGLEMGSVWSRLGAEVTVVEFLPAVGGPMDADISKALSRIISKQGI 273


>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 291 SLTAIAKSQVPFTHWNCSSAFRFPLRSPSFSKVFNCTLISA 169
           SL A++++ +P    +CS  F+      S  +V  C L++A
Sbjct: 9   SLEALSQNLLPGNQNHCSFDFQLKEIDDSIKQVIKCALVAA 49


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 309 NASRKIWNSKRKYSKIWTMS-SMTTLSY 389
           NA RK+WN +R+Y      S S T +SY
Sbjct: 36  NAIRKLWNERRRYRMPKDESISPTPISY 63


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 282 PLRMRFSYKNASRKIWNSKRKYSKIW 359
           PL++ F YKN +R+ W S  +   +W
Sbjct: 394 PLQVAFVYKNLARR-WISLEEIENLW 418


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -3

Query: 216 RSPSFSKVF---NCTLISAIASVICFSTTSNKVTWYPTEANNIAHDLPISPLPTIPT 55
           R+P + K     +CT ++ +A  +  +     +  + T A     D  I+P+PT+P+
Sbjct: 127 RNPEYIKGLCYDSCTPLANLAVGLSLNIQEVLIDCFATAACFTTEDTSINPIPTLPS 183


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = -3

Query: 147 STTSNKVTWY-PTEANNIAH--DLPISPLPTIPTFSDLNLE 34
           ST+ N+V ++ P +   IA   D P+S +PT PT S+ +++
Sbjct: 336 STSDNRVMFFLPWQGKVIAGTTDKPLSSVPTNPTPSEDDIQ 376


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 351 WNTFFLSSKFSGTHS 307
           WN FFL +KF   HS
Sbjct: 364 WNIFFLCTKFWSLHS 378


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 220 P*ESIFL*SFQLHLNISD--CIGNLLLNNIEQSYLVSD 113
           P E+I +  +   L ISD  C+G LL   I  +Y+V +
Sbjct: 735 PIETIGVDKYTTFLFISDKKCVGLLLAERISSAYIVDE 772


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,055,322
Number of Sequences: 5004
Number of extensions: 41024
Number of successful extensions: 143
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)