Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L11
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase, put...    54   4e-08
At1g56000.1 68414.m06425 amine oxidase-related contains Pfam pro...    31   0.33 
At1g55980.1 68414.m06421 expressed protein                             31   0.33 
At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase NAD-bi...    30   0.75 
At1g50080.1 68414.m05618 hypothetical protein                          28   3.0  
At1g52630.2 68414.m05942 expressed protein contains Pfam PF03138...    28   4.0  
At1g52630.1 68414.m05943 expressed protein contains Pfam PF03138...    28   4.0  
At5g26250.1 68418.m03131 sugar transporter, putative similar to ...    27   7.0  
At3g52480.1 68416.m05771 expressed protein                             27   7.0  
At5g17700.1 68418.m02074 MATE efflux family protein similar to r...    27   9.3  
At3g46340.1 68416.m05018 leucine-rich repeat protein kinase, put...    27   9.3  
At2g27280.1 68415.m03278 hypothetical protein                          27   9.3  
At1g64320.1 68414.m07289 myosin heavy chain-related similar to m...    27   9.3  
At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR...    27   9.3  

>At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase,
           putative similar to S(+)-beta-hydroxybutyryl CoA
           dehydrogenase (3-hydroxybutyryl-CoA dehydrogenase)
           [Paracoccus denitrificans] GI:12003356; contains Pfam
           profiles PF02737: 3-hydroxyacyl-CoA dehydrogenase NAD
           binding, PF00725: 3-hydroxyacyl-CoA dehydrogenase
           C-terminal
          Length = 294

 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 37/139 (26%), Positives = 62/139 (44%)
 Frame = +2

Query: 50  EKVGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLLRGNL 229
           + VG+VG+G +G   A L A+ G  V L D     ++ A A I   +K     GL+   +
Sbjct: 5   KSVGVVGAGQMGSGIAQLAATSGLDVWLMDADRDALSRATAAISSSVKRFVSKGLISKEV 64

Query: 230 NADEQFQCVKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXXXX 409
             D+    ++ T +L       I V E + E+ ++KKK+F++LD +   + I        
Sbjct: 65  -GDDAMHRLRLTSNLEDLCSADIIV-EAIVESEDIKKKLFKDLDGIAKSSAILASNTSSI 122

Query: 410 XXXXXXENMKHKAQVIVSH 466
                    +  +QVI  H
Sbjct: 123 SITRLASATRRPSQVIGMH 141


>At1g56000.1 68414.m06425 amine oxidase-related contains Pfam
           profile PF01593: amine oxidase, flavin-containing
          Length = 384

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 17  LRVVMASKFKSEKVGIVGSGLIGRSWAMLFASVGYQVTLFD 139
           +R  M+S   + KV ++GSG+ G   A   A  G  VT+FD
Sbjct: 10  IRKQMSSVAVAMKVAVIGSGISGAVCASTLARNGVSVTIFD 50


>At1g55980.1 68414.m06421 expressed protein
          Length = 464

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 17  LRVVMASKFKSEKVGIVGSGLIGRSWAMLFASVGYQVTLFD 139
           +R  M+S   + KV ++GSG+ G   A   A  G  VT+FD
Sbjct: 148 IRKQMSSVAVAMKVAVIGSGISGAVCASTLARNGVSVTIFD 188


>At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase
           NAD-binding domain-containing protein similar to
           SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
           1.1.1.60) (Tartronate semialdehyde reductase)
           {Escherichia coli}; contains Pfam profile PF03446: NAD
           binding domain of 6-phosphogluconate dehydrogenase
          Length = 334

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 53  KVGIVGSGLIGRSWAMLFASVGYQVTLFD 139
           K+G +G+G++GRS        GY VT+F+
Sbjct: 39  KIGWIGTGVMGRSMCGHLIKAGYTVTVFN 67


>At1g50080.1 68414.m05618 hypothetical protein
          Length = 91

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -3

Query: 192 FNCTLISAIASVICFSTTSNKVTWYPTEANNIAHDLPISPLPTIPTFSDLNLEAMTT 22
           FNC L+   AS I      + +     + NN+ H+    P PTI    D  +  + T
Sbjct: 18  FNCVLLCMFASFIRKLAAQSTIYNLWKQRNNVVHNQVSIPAPTIFKLIDREIRNIIT 74


>At1g52630.2 68414.m05942 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 351

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 447 ALCFIFSENSDGNVVLV--ELDKIVLSSTTLSKFWNTFFLSSK 325
           AL +  S NSD  V      +DKIV +  T  +  NT FLS K
Sbjct: 265 ALDYHVSINSDAYVATYFGNMDKIVAAMRTYKQMHNTLFLSRK 307


>At1g52630.1 68414.m05943 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 439

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 447 ALCFIFSENSDGNVVLV--ELDKIVLSSTTLSKFWNTFFLSSK 325
           AL +  S NSD  V      +DKIV +  T  +  NT FLS K
Sbjct: 353 ALDYHVSINSDAYVATYFGNMDKIVAAMRTYKQMHNTLFLSRK 395


>At5g26250.1 68418.m03131 sugar transporter, putative similar to
           hexose transporter [Lycopersicon esculentum] GI:5734440,
           sugar carrier protein {Ricinus communis} SP|Q41144,
           monosaccharide transporter [Nicotiana tabacum] GI:19885;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 507

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 191 KTLEKDGLLRGNLNADEQFQCVKGTCDLAIAVKD 292
           +TL+K   +RG  + DE+++ +   CD+A  VKD
Sbjct: 237 ETLKK---IRGVEDVDEEYESIVHACDIARQVKD 267


>At3g52480.1 68416.m05771 expressed protein
          Length = 209

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 285 TAIAKSQVPFTHWNCSSAFRFPLRSPSF 202
           T I+  +V F+H+N ++ F  P  SP F
Sbjct: 159 TDISDDEVDFSHYNQTTPFSTPCASPPF 186


>At5g17700.1 68418.m02074 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 497

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +2

Query: 47  SEKVGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQL 190
           S KV +V S +IG   + L  + G Q++      + ++DA+AD+ + L
Sbjct: 336 SIKVVLVVSAVIGVICSALCLAFGGQISYLFSDSQAVSDAVADLSIVL 383


>At3g46340.1 68416.m05018 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 889

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 200 EKDGLLRGNLNADEQFQCVKGTC 268
           EKDGL    L+ DEQ +C  G+C
Sbjct: 485 EKDGL---KLSVDEQIRCFPGSC 504


>At2g27280.1 68415.m03278 hypothetical protein 
          Length = 427

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 137 DVVEKQITDAIADIKVQLKTLEK 205
           D  EK+ITDA+   K +L+  EK
Sbjct: 41  DTAEKEITDAVTTAKERLRETEK 63


>At1g64320.1 68414.m07289 myosin heavy chain-related similar to
           myosin heavy chain (GI:4249703) [Rana catesbeiana];
           similar to smooth muscle myosin heavy chain SM2
           (GI:2352945) [Homo sapiens]
          Length = 476

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
 Frame = +2

Query: 125 VTLFDVVEKQITDAIADIKVQLKTLEKD-GLLR-------GNLNAD--EQFQCVKGTCDL 274
           V  F   E  +T  I D+K QLK LE++ G LR       GNL     E+ + VKG  D 
Sbjct: 38  VNKFGNSELGLTSRIEDLKCQLKNLEQEIGFLRARNAGLAGNLEVTKVEEKERVKGLMDQ 97

Query: 275 AIAVK 289
              +K
Sbjct: 98  VNGMK 102


>At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1007

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = -3

Query: 396 ELDKIVLSSTTLSKFWNTFFLSSKFSGTHSCTKIASLTAIAK--SQVPFTHWNCSSAFRF 223
           E+D++++S     K  N  FL    +G H+  +   +    K    +   HW+  S  R 
Sbjct: 535 EIDELMISPKAFEKMCNLLFLKVYDAGWHTGKRKLDIPEDIKFPRTIRLFHWDAYSGKRL 594

Query: 222 P 220
           P
Sbjct: 595 P 595


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,581,158
Number of Sequences: 28952
Number of extensions: 210041
Number of successful extensions: 714
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)