Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_L08
(480 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022976-11|AAC69080.1| 196|Caenorhabditis elegans Serpentine r... 29 1.3
U13019-7|AAC24445.2| 689|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z66519-3|CAA91372.1| 634|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z66519-2|CAA91381.1| 634|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z67737-6|CAA91540.3| 399|Caenorhabditis elegans Hypothetical pr... 28 4.0
AF040661-3|AAG24226.1| 187|Caenorhabditis elegans Hypothetical ... 28 4.0
Z46996-7|CAE17681.1| 152|Caenorhabditis elegans Hypothetical pr... 27 5.3
U53146-1|AAA96111.1| 348|Caenorhabditis elegans Hypothetical pr... 27 7.0
AF067949-8|AAX88812.1| 565|Caenorhabditis elegans Peroxisomal m... 27 7.0
AF067949-7|AAO25995.2| 626|Caenorhabditis elegans Peroxisomal m... 27 7.0
AF067949-6|AAC19238.1| 598|Caenorhabditis elegans Peroxisomal m... 27 7.0
AC024696-1|AAK84516.1| 348|Caenorhabditis elegans Hypothetical ... 27 7.0
U28928-1|AAA68334.3| 589|Caenorhabditis elegans Anchor cell fus... 27 9.3
U23176-4|AAC46716.1| 632|Caenorhabditis elegans Fem-3 mrna bind... 27 9.3
EF205023-1|ABP04049.1| 589|Caenorhabditis elegans anchor cell f... 27 9.3
>AF022976-11|AAC69080.1| 196|Caenorhabditis elegans Serpentine
receptor, class w protein108 protein.
Length = 196
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/46 (28%), Positives = 29/46 (63%)
Frame = +2
Query: 251 LLLITSLLAIHSTVQRTRRASKSLICSLRMSSYTTKASTFLTNSTF 388
++++ ++L +H+ + + ++A K SLR + +TTK F+T + F
Sbjct: 58 VIIVLTILLLHA-LNKAKKARKKKKSSLRDTDHTTKLVVFMTAAFF 102
>U13019-7|AAC24445.2| 689|Caenorhabditis elegans Hypothetical
protein T12A2.6 protein.
Length = 689
Score = 29.1 bits (62), Expect = 1.7
Identities = 21/69 (30%), Positives = 29/69 (42%)
Frame = -2
Query: 347 TKTSLKNILGSLKHVESAGRSNG*PKGLLSITKASNGVRSWLLDSNGYTKTKNWNGYPPS 168
T L IL +++ + + S L I+K S R WL + + N N PPS
Sbjct: 492 TNEDLNEILKTVRDIYRSSNSASIFMLLSDISKLSRDAR-WLDSWSAFRAIHNLNNGPPS 550
Query: 167 VPLGNINLF 141
PL LF
Sbjct: 551 YPLSLAALF 559
>Z66519-3|CAA91372.1| 634|Caenorhabditis elegans Hypothetical
protein B0334.3b protein.
Length = 634
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 291 TVEWIAKRLVINNKGLKWCQIMATRFKRIYENKELEWIST 172
T++ K LVI KG W + AT+ ++ +L W++T
Sbjct: 267 TLKSAKKPLVIVGKGAAWSERGATQVQQFLTKSKLPWLAT 306
>Z66519-2|CAA91381.1| 634|Caenorhabditis elegans Hypothetical
protein B0334.3a protein.
Length = 634
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 291 TVEWIAKRLVINNKGLKWCQIMATRFKRIYENKELEWIST 172
T++ K LVI KG W + AT+ ++ +L W++T
Sbjct: 267 TLKSAKKPLVIVGKGAAWSERGATQVQQFLTKSKLPWLAT 306
>Z67737-6|CAA91540.3| 399|Caenorhabditis elegans Hypothetical
protein T01H10.7 protein.
Length = 399
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -3
Query: 205 IRKQRTGMDIHLQYLLATSIYLACIQNLQTYTTELFLRLI 86
+RK ++ M+ L+Y+L + C+ L+ + T +F+ +I
Sbjct: 353 LRKNKSKMNQKLEYVLGEPLETICMVILEIFNTAIFMVMI 392
>AF040661-3|AAG24226.1| 187|Caenorhabditis elegans Hypothetical
protein W10G11.1 protein.
Length = 187
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 224 LLDSNGYTKTKNWNGYPPSVP 162
LLD+ +KNWN YP +P
Sbjct: 109 LLDARASECSKNWNPYPKEIP 129
>Z46996-7|CAE17681.1| 152|Caenorhabditis elegans Hypothetical
protein C34C12.9 protein.
Length = 152
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 305 RASKSLICSLRMSSYTTKASTFLTNSTFPLTFLKPMMFLNNKRC 436
R+S SLR T ST T S+ P + + P MF N+++C
Sbjct: 77 RSSTGFYSSLRNLFSTGNPSTTTTISSIPESHINP-MFANHEKC 119
>U53146-1|AAA96111.1| 348|Caenorhabditis elegans Hypothetical
protein ZC411.1 protein.
Length = 348
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -2
Query: 152 INLFGMHSKPSDIYNGTFPSSNNFMRSVNG 63
INL P ++ GT+ + NF++ V G
Sbjct: 235 INLLTGQKPPETVFQGTYVETRNFLKIVRG 264
>AF067949-8|AAX88812.1| 565|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform c protein.
Length = 565
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 214 ESSSHDLTPFEAFVIDNKPFGYPFDRPADSTCFKEPNMFFKDVFVYHEG 360
ES+ + FE V + F F R + C++ P+ FF+ F Y+ G
Sbjct: 233 ESAFYKSAEFE-HVFSDLSFDVLFKRLLNFMCWRFPSQFFQSFFDYYGG 280
>AF067949-7|AAO25995.2| 626|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform b protein.
Length = 626
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 214 ESSSHDLTPFEAFVIDNKPFGYPFDRPADSTCFKEPNMFFKDVFVYHEG 360
ES+ + FE V + F F R + C++ P+ FF+ F Y+ G
Sbjct: 233 ESAFYKSAEFE-HVFSDLSFDVLFKRLLNFMCWRFPSQFFQSFFDYYGG 280
>AF067949-6|AAC19238.1| 598|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform a protein.
Length = 598
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 214 ESSSHDLTPFEAFVIDNKPFGYPFDRPADSTCFKEPNMFFKDVFVYHEG 360
ES+ + FE V + F F R + C++ P+ FF+ F Y+ G
Sbjct: 233 ESAFYKSAEFE-HVFSDLSFDVLFKRLLNFMCWRFPSQFFQSFFDYYGG 280
>AC024696-1|AAK84516.1| 348|Caenorhabditis elegans Hypothetical
protein F07B7.7 protein.
Length = 348
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -2
Query: 152 INLFGMHSKPSDIYNGTFPSSNNFMRSVNG 63
INL P ++ GT+ + NF++ V G
Sbjct: 235 INLLTGQKPPETVFQGTYVETRNFLKIVRG 264
>U28928-1|AAA68334.3| 589|Caenorhabditis elegans Anchor cell fusion
failure protein1 protein.
Length = 589
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 122 SDIYNGTFPSSNNFMRSVNGKESS 51
+D YN S NNF+RSV ESS
Sbjct: 335 NDTYNERRVSDNNFVRSVKVDESS 358
>U23176-4|AAC46716.1| 632|Caenorhabditis elegans Fem-3 mrna binding
factor protein 2 protein.
Length = 632
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 320 GSLKHVESAGRSNG*PKGLLSITKASNGVRSWLLDSNGYTKTK 192
GS KH + S T+++N + +W LDSNG +++
Sbjct: 140 GSSKHYHLKYSRPALSRNSRSFTRSNNVLPTWSLDSNGEMRSR 182
>EF205023-1|ABP04049.1| 589|Caenorhabditis elegans anchor cell
fusion failure-1 protein.
Length = 589
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 122 SDIYNGTFPSSNNFMRSVNGKESS 51
+D YN S NNF+RSV ESS
Sbjct: 335 NDTYNERRVSDNNFVRSVKVDESS 358
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,986,861
Number of Sequences: 27780
Number of extensions: 233049
Number of successful extensions: 678
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -