Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_L08
(480 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g39760.1 68417.m05631 kelch repeat-containing F-box family pr... 29 1.6
At2g12480.1 68415.m01349 serine carboxypeptidase S10 family prot... 29 1.6
At3g13680.1 68416.m01727 F-box family protein contains F-box dom... 29 2.1
At5g07280.1 68418.m00830 leucine-rich repeat protein kinase, put... 28 2.8
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl... 28 2.8
At1g33610.1 68414.m04160 leucine-rich repeat family protein cont... 28 2.8
At5g01160.1 68418.m00020 e-cadherin binding protein-related cont... 28 3.7
At3g17490.1 68416.m02234 F-box family protein similar to F-box p... 27 5.0
At1g29355.1 68414.m03589 expressed protein 27 5.0
At2g02500.1 68415.m00189 expressed protein contains Pfam profile... 27 6.5
At2g17220.2 68415.m01989 protein kinase, putative similar to pro... 27 8.7
At1g50030.1 68414.m05614 target of rapamycin protein (TOR) ident... 27 8.7
>At4g39760.1 68417.m05631 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 369
Score = 29.1 bits (62), Expect = 1.6
Identities = 18/59 (30%), Positives = 21/59 (35%)
Frame = -1
Query: 282 WIAKRLVINNKGLKWCQIMATRFKRIYENKELEWISTFSTSWQHQSIWHAFKTFRHIQR 106
W V N WC I R+ IY NK W+ T S W+ FR R
Sbjct: 247 WKVTEAVFN---FSWCVIEKVRY--IYYNKNCWWLDTKSKDWRKIKGLDFLNKFRETDR 300
>At2g12480.1 68415.m01349 serine carboxypeptidase S10 family protein
similar to Serine carboxypeptidase II precursor
(Carboxypeptidase D) (CP-MII) (SP:P08818) [Hordeum
vulgare]
Length = 442
Score = 29.1 bits (62), Expect = 1.6
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Frame = -1
Query: 366 VLAFVVYEDILKEHIRL-----FEARRVRWTVEWIAKRLVINNKGLKWCQIMATRFKRIY 202
+L V Y I+++ +RL A R R EW +N G+ M KRI
Sbjct: 277 ILLDVCYPSIVQQELRLKKMNALHANRTRLPYEWTMCSNRLNYSGIDGYIDMLPSLKRII 336
Query: 201 ENKELEWI 178
+N+ WI
Sbjct: 337 QNQTPVWI 344
>At3g13680.1 68416.m01727 F-box family protein contains F-box domain
Pfam:PF00646
Length = 395
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 260 ITSLLAIHSTVQRTRRASKSLICSLRMSSYTTKASTFL 373
+TSL AI ST Q+ SKS IC + ++ K F+
Sbjct: 21 LTSLRAIRSTCQKWNSLSKSQICGRKATAAENKFLGFM 58
>At5g07280.1 68418.m00830 leucine-rich repeat protein kinase,
putative / extra sporogenous cells (ESP) identical to
extra sporogenous cells [Arabidopsis thaliana]
gi|23304947|emb|CAD42912; contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain
Length = 1192
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 215 SNGYTKTKNWNGYPPSVPLGNINLFGMHSKPSDIYNGTFP 96
SN Y +++G PS +GNI+L + PS +NG P
Sbjct: 189 SNLYMGLNSFSGQIPS-EIGNISLLKNFAAPSCFFNGPLP 227
>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
identical to ubiquitin-protein ligase 1 [Arabidopsis
thaliana] GI:7108521; E3, HECT-domain protein family;
similar to GI:7108521, GB:AAF36454 from [Arabidopsis
thaliana]
Length = 3891
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 417 NIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRL 316
N++ F G EFV +++ V YED + E IR+
Sbjct: 534 NVVSF--FNGEPEFVNELVTLVSYEDTVPEKIRI 565
>At1g33610.1 68414.m04160 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611
Length = 907
Score = 28.3 bits (60), Expect = 2.8
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -2
Query: 185 NGYPPSVPLGNINLFGMHSKP--SDIYNGTFPSSNNFMRSVNGKESSLKSENSFELRTI 15
N Y VP+ NL + + ++ G FP ++S+NG ES S N F L+TI
Sbjct: 710 NKYSGVVPMSFTNLINITNLDLSHNLLTGPFP----VLKSINGIESLDLSYNKFHLKTI 764
>At5g01160.1 68418.m00020 e-cadherin binding protein-related
contains weak similarity to E-cadherin binding protein
E7 [Mus musculus GP|9622093|gb|AAF89617
Length = 360
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 212 NGYTKTKNWNGYPPSVPLGNINLFGMHSKPS 120
+G ++ + GYPP P+ N+N G + PS
Sbjct: 294 SGGSEQSSLLGYPPPSPMTNLNFQGSYPPPS 324
>At3g17490.1 68416.m02234 F-box family protein similar to F-box
protein family, AtFBX9 (GI:20197985) [Arabidopsis
thaliana]; contains Pfam PF00646: F-box domain and
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 388
Score = 27.5 bits (58), Expect = 5.0
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = -2
Query: 263 LSITKASNGVRSWLLDSNGYTKTKNWNGYPPSVPLG-NINLFGMHSKPSDIYNGTFPSSN 87
+S+ + + W N +K P LG + F ++S S+++ ++
Sbjct: 21 ISLKRLRYTCKQWNALFNDQRFSKKHRDKAPKTYLGLTLKDFRIYSMSSNLHGLLHNNNI 80
Query: 86 NFMRSVNGKESSLKSENSFELRTILFC 6
+ + GK SSL N FE+ I C
Sbjct: 81 DLLMEFKGKLSSLNDLNDFEISQIYPC 107
>At1g29355.1 68414.m03589 expressed protein
Length = 307
Score = 27.5 bits (58), Expect = 5.0
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = -2
Query: 269 GLLSITKASNGVRSWLLDSNGYTKTKNWNGYPPSVPLGNINLFGMHSKPSD-IYNGTFPS 93
GL ++ + V L+ S K K+W + + ++ S+ I+ G PS
Sbjct: 213 GLSHVSDSQLTVSDPLISSLRLDKEKSWYDQTVEEEENHAQEAPLEARFSNAIHIGELPS 272
Query: 92 SNNFMRSVNGKESSLKSENSFE 27
+N +N E +KSE ++E
Sbjct: 273 ANPENTEINASEMEIKSEETWE 294
>At2g02500.1 68415.m00189 expressed protein contains Pfam profile:
PF01128 uncharacterized protein family UPF0007;
identical to GP:12697583 2-C-methyl-D-erythritol
4-phosphate cytidyltransferase {Arabidopsis thaliana};
identical to cDNA
4-Diphosphocytidyl-2C-methyl-D-erythritol synthase
(ISPD) GI:7385140
Length = 302
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 37 FSLFKEDSLPLTDLMKLLDEGKVPLYMSEG 126
F L K + L +TD + +++ K P+Y+S+G
Sbjct: 249 FELVKSEGLEVTDDVSIVEYLKHPVYVSQG 278
>At2g17220.2 68415.m01989 protein kinase, putative similar to
protein kinase APK1A [Arabidopsis thaliana]
Swiss-Prot:Q06548
Length = 413
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 131 SKPSDIYNGTFPSSNNFMRSVNGKESSLKSENSFEL 24
S +I +GTF SSNN + + S++ S + F +
Sbjct: 18 SSTGNISSGTFKSSNNTTTTGTSRGSNISSNSGFSV 53
>At1g50030.1 68414.m05614 target of rapamycin protein (TOR)
identical to pTOR [Arabidopsis thaliana] GI:12002902;
contains Pfam profiles PF00454 Phosphatidylinositol 3-
and 4-kinase, PF02259 FAT domain, PF02260 FATC domain
Length = 2481
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -1
Query: 342 DILKEHIRLFEARRVRWTVEWIAKRLVINNKGL 244
+ L+ +R+ E R RW V+W + GL
Sbjct: 231 EALRACLRVIEKRETRWRVQWYYRMFEATQDGL 263
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,385,434
Number of Sequences: 28952
Number of extensions: 219986
Number of successful extensions: 615
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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