Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L07
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0578 + 10869627-10869702,10870489-10870555,10870813-108709...    38   0.009
11_06_0136 + 20481305-20481725,20483256-20483950                       29   2.5  
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257...    28   7.6  

>09_02_0578 +
           10869627-10869702,10870489-10870555,10870813-10870963,
           10871043-10871111,10871992-10872030,10872113-10872186,
           10872281-10872347,10872902-10873075,10873169-10873852
          Length = 466

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +2

Query: 410 DDTSFSPEMCHQVFGENENIFGYTDLHIKLFYSAGSLQTYLGIDYTDXIEPFTSEGMKA- 586
           + TS  P   +  FGE+  I+GY +L I ++ SA S   Y  I + +     TS+G K  
Sbjct: 72  NSTSLQPFDLNHFFGEDGKIYGYKNLKINVWISAISFHAYADISFEE-----TSDGGKGI 126

Query: 587 DDIEGALKKVLAPGYVTNLDQFV 655
            D++  L+ +     V   D+F+
Sbjct: 127 TDLKPVLQNIFGENLVEK-DEFL 148


>11_06_0136 + 20481305-20481725,20483256-20483950
          Length = 371

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 338 CHLVVH-GNEILELKLVRSTEDLEDDDTSFSPEMCHQVFGENENIFG 475
           CHL+V  G E     +     D   DDT FS + C  +   NEN+ G
Sbjct: 221 CHLLVRRGREGAHNIITAQGRDKPGDDTGFSFQNCSIMAKPNENLTG 267


>08_02_1277 +
           25823835-25825113,25825201-25825418,25825501-25825724,
           25826468-25827080,25827735-25827775,25830549-25831191,
           25832595-25834012,25834110-25834251,25834415-25834522,
           25835346-25835558,25835643-25835753,25836099-25836293,
           25836555-25836695,25836835-25836909
          Length = 1806

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +2

Query: 389 STEDLEDDDTS--FSPEMCHQVFGENENIFGYTDLHIKLFYSAGSLQTYLGIDYTDXIEP 562
           S EDL D++T+  +S E C  + G + +         K  Y        L IDY   +  
Sbjct: 455 SIEDLYDNETNSCYSEESCSTMSGSHHSTLDRLYTWEKKLYKEVKAGERLRIDYEKRLNH 514

Query: 563 FTSEGMKADD 592
             ++ +K D+
Sbjct: 515 LRNQDVKGDE 524


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,813,089
Number of Sequences: 37544
Number of extensions: 299637
Number of successful extensions: 520
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)