Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L07
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10053| Best HMM Match : DUF402 (HMM E-Value=3.4)                    80   1e-15
SB_33932| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)                 30   1.9  
SB_2234| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)                  30   1.9  
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_53795| Best HMM Match : rve (HMM E-Value=5.9e-15)                   29   4.4  
SB_8310| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_55537| Best HMM Match : GreA_GreB (HMM E-Value=2.3)                 28   7.7  

>SB_10053| Best HMM Match : DUF402 (HMM E-Value=3.4)
          Length = 252

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 35/92 (38%), Positives = 56/92 (60%)
 Frame = +2

Query: 383 VRSTEDLEDDDTSFSPEMCHQVFGENENIFGYTDLHIKLFYSAGSLQTYLGIDYTDXIEP 562
           V S +D+ D    F P   HQ FG++E IFGY  L ++L+Y AG+L TYLG+ Y   I  
Sbjct: 38  VTSEKDVFDKGRQFHPAFSHQFFGDSETIFGYCGLEVQLYYHAGTLLTYLGLTYESNING 97

Query: 563 FTSEGMKADDIEGALKKVLAPGYVTNLDQFVS 658
             ++G++AD +   + +    G++TN D+F++
Sbjct: 98  KVADGIEADPVVQIIGEQFPGGFLTNKDEFIA 129


>SB_33932| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)
          Length = 541

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = -3

Query: 635 LHILELVPF-SMHLLYHQLSCLQM*MVQSXLC---NQCLDMSVDCLHYKTI*CASQCTQI 468
           L ILE++P  S  +L   +S +Q   V + +C    +C ++SVD LHY +  C    T  
Sbjct: 313 LSILEIIPKNSPSILQFLVSDIQSFAVTNNMCLNPAKCKELSVDFLHYNSHVCQPIATGG 372

Query: 467 Y 465
           Y
Sbjct: 373 Y 373


>SB_2234| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)
          Length = 476

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = -3

Query: 635 LHILELVPF-SMHLLYHQLSCLQM*MVQSXLC---NQCLDMSVDCLHYKTI*CASQCTQI 468
           L ILE++P  S  +L   +S +Q   V + +C    +C ++SVD LHY +  C    T  
Sbjct: 248 LSILEIIPKNSPSILQFLVSDIQSFAVTNNMCLNPAKCKELSVDFLHYNSHVCQPIATGG 307

Query: 467 Y 465
           Y
Sbjct: 308 Y 308


>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 480

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +2

Query: 404 EDDDTSFSPEMCHQVFGENENIFGYTDLHIKLFYSAGSLQT--YLGIDYTDXIEPFTSEG 577
           +D+D +   E    V     NI   T   +K   S   L +  Y G+D +  ++P   +G
Sbjct: 216 KDEDPARLAEAASVVADLRRNIVSRTVGFLKRIVSFVQLSSFFYQGLDLSKLLKPMQDKG 275

Query: 578 MKADDIEGALKKV 616
           + +DDI   L+ +
Sbjct: 276 ISSDDIRELLRSL 288


>SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +2

Query: 302 YICRTCKMT---DALCHLVVHGNEILELKLVRSTEDLEDDDT 418
           Y C  CK     D LC++ V G++ L LK   +T+D +DDDT
Sbjct: 495 YKCSLCKEVVPPDHLCYVTV-GDDAL-LKKKNTTDDDDDDDT 534


>SB_53795| Best HMM Match : rve (HMM E-Value=5.9e-15)
          Length = 615

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +2

Query: 485 LHIKLFYSAGSLQTYLGIDYTD----XIEPFTSEGMKADDIEGALKKVLAPGYVTNLDQF 652
           L +K  + +GS ++Y+     +     ++P +S    A    GA+KK +   +V+ +D+ 
Sbjct: 193 LQVKALFDSGSSESYIHPSLVEQASLTVQPSSSTVSMATSSTGAIKKTVEEAFVSAIDES 252

Query: 653 V 655
           +
Sbjct: 253 I 253


>SB_8310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -3

Query: 653 QIGLS*LHI-LELVPFSMHLLYHQLSCLQM*MVQSXLCNQCLDMSVDCLHYKTI*CASQC 477
           Q+ +  +HI +  V  +MH++Y  ++C+Q+ M    +   C+ +++  +H         C
Sbjct: 152 QVNMHVVHITMTCVQVNMHVVYFTMTCVQVNMHVVYITMACVQVNMHVVH-----ITMTC 206

Query: 476 TQIYFH 459
            Q+  H
Sbjct: 207 VQVNMH 212


>SB_55537| Best HMM Match : GreA_GreB (HMM E-Value=2.3)
          Length = 126

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 299 YYICRTCKMTDALCHLV-VHGNEILELKLVRSTEDLEDDD 415
           +Y    C +   + H + + G+ +L L L+ +T+D +DDD
Sbjct: 5   HYSINKCTILSVILHFIPLDGDVVLLLWLMNATDDDDDDD 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,414,570
Number of Sequences: 59808
Number of extensions: 378225
Number of successful extensions: 702
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)