Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L07
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02580.1 68414.m00209 maternal embryogenesis control protein ...    34   0.073

>At1g02580.1 68414.m00209 maternal embryogenesis control protein /
           MEDEA (MEA) nearly identical to MEDEA GB:AAC39446
           GI:3089625 from [Arabidopsis thaliana]; contains Pfam
           profile PF00856: SET domain
          Length = 689

 Score = 34.3 bits (75), Expect = 0.073
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
 Frame = +2

Query: 362 EILELKLVRSTEDLEDDDTSFSPEMCHQVFGENENIFGYT---DLHIKLFYSAGSLQTYL 532
           E LEL      ED E+D+     E C   F E+ + F +T   D  +       +L  YL
Sbjct: 166 EALELSSEEDEEDEEEDEEEIKKEKCE--FSEDVDRFIWTVGQDYGLDDLVVRRALAKYL 223

Query: 533 GIDYTDXIEPFTSEGMKADDIEGALKKVLAPGYVTNLDQF 652
            +D +D +E +    +K D   G    + +    T    F
Sbjct: 224 EVDVSDILERYNELKLKNDGTAGEASDLTSKTITTAFQDF 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,513,464
Number of Sequences: 28952
Number of extensions: 264828
Number of successful extensions: 496
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)