Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L06
         (514 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30238| Best HMM Match : No HMM Matches (HMM E-Value=.)              76   1e-14
SB_24978| Best HMM Match : ChaC (HMM E-Value=0)                        27   6.9  
SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_30238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 76.2 bits (179), Expect = 1e-14
 Identities = 32/58 (55%), Positives = 39/58 (67%)
 Frame = +1

Query: 340 GTADYVVTGAWSXXXXXXXXXYGKVNMVLPATDRHVDIPDQSTWNLDPNASYVHICAN 513
           G+ADY+VTGAWS         YGKVN+VLP T  +  IPD S W L+P+ASYV+ C N
Sbjct: 42  GSADYIVTGAWSAKAVKEAEKYGKVNLVLPKTSTYDSIPDPSQWTLNPDASYVYYCEN 99



 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 19/36 (52%), Positives = 24/36 (66%)
 Frame = +1

Query: 73  KVYNFGAGPAKLPEEVYEIIRSELTNFENSGISLLE 180
           KV NF  GPAKLPE V +  + E  N+ N GIS++E
Sbjct: 5   KVINFAPGPAKLPEVVLKKAQEEFLNYGNLGISVME 40


>SB_24978| Best HMM Match : ChaC (HMM E-Value=0)
          Length = 189

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 85  FGAGPAKLPEEVYEIIRSELTNFENS 162
           F  GPA LPE  Y+I  S+ T+ +NS
Sbjct: 118 FYLGPAPLPEIAYQIAHSKGTSGKNS 143


>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1925

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 478  PSSTLTDPVYRHDDQSLVKPYSLFHIFSLPSQP*LTRH 365
            P+  +T+  + H  QSL    ++    SLP+ P +T+H
Sbjct: 1442 PNPVITNNTHHHQTQSLPTTPNITKNQSLPTTPTITKH 1479


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,136,894
Number of Sequences: 59808
Number of extensions: 268316
Number of successful extensions: 515
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)