Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_L06
         (514 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35630.1 68417.m05060 phosphoserine aminotransferase, chlorop...   106   1e-23
At2g17630.1 68415.m02039 phosphoserine aminotransferase, putativ...    98   4e-21
At3g52190.1 68416.m05731 transducin family protein / WD-40 repea...    27   7.4  
At2g46890.1 68415.m05856 expressed protein                             27   7.4  
At5g57740.1 68418.m07218 zinc finger (C3HC4-type RING finger) fa...    27   9.8  

>At4g35630.1 68417.m05060 phosphoserine aminotransferase,
           chloroplast (PSAT) identical to Phosphoserine
           aminotransferase, chloroplast precursor (PSAT)
           (SP:Q96255)[Arabidopsis thaliana]; contains TIGRFAM
           TIGR01364: phosphoserine aminotransferase; contains Pfam
           PF00266: aminotransferase, class V
          Length = 430

 Score =  106 bits (254), Expect = 1e-23
 Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 1/151 (0%)
 Frame = +1

Query: 64  NMSKVYNFGAGPAKLPEEVYEIIRSELTNFENSGISLLETSHRTATYMNLNVEVQNVVRR 243
           +  +V+NF AGPA LPE V    +++L N+  SG+S++E SHR   ++++  + ++ +R+
Sbjct: 69  SQERVFNFAAGPATLPENVLLKAQADLYNWRGSGMSVMEMSHRGKEFLSIIQKAESDLRQ 128

Query: 244 LLDVPSNYKIXXXXXXXXXXXXXVPLNLISRTGTADYVVTGAWSXXXXXXXXXYGKVNMV 423
           LL++P  Y +             +PLNL     T D+VVTG+W          Y K N++
Sbjct: 129 LLEIPQEYSVLFLQGGATTQFAALPLNLCKSDDTVDFVVTGSWGDKAVKEAKKYCKTNVI 188

Query: 424 LPA-TDRHVDIPDQSTWNLDPNASYVHICAN 513
               ++++  +P        P+A Y+HICAN
Sbjct: 189 WSGKSEKYTKVPSFEELEQTPDAKYLHICAN 219


>At2g17630.1 68415.m02039 phosphoserine aminotransferase, putative
           similar to Phosphoserine aminotransferase, chloroplast
           precursor (PSAT) (SP:Q96255) [Arabidopsis thaliana];
           contains TIGRFAM TIGR01364: phosphoserine
           aminotransferase; contains Pfam PF00266:
           aminotransferase, class V
          Length = 422

 Score = 97.9 bits (233), Expect = 4e-21
 Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 1/148 (0%)
 Frame = +1

Query: 73  KVYNFGAGPAKLPEEVYEIIRSELTNFENSGISLLETSHRTATYMNLNVEVQNVVRRLLD 252
           +V NF AGPA LPE V    +S+L N+  SG+S++E SHR   ++++  + ++ +R+LL+
Sbjct: 62  RVINFAAGPAALPENVLLKAQSDLYNWRGSGMSVMEMSHRGKEFLSIIQKAESDLRQLLE 121

Query: 253 VPSNYKIXXXXXXXXXXXXXVPLNLISRTGTADYVVTGAWSXXXXXXXXXYGKVNMVLPA 432
           +PS Y +             +PLNL     + DY+VTG+W          Y    ++   
Sbjct: 122 IPSEYSVLFLQGGATTQFAALPLNLCKSDDSVDYIVTGSWGDKAFKEAKKYCNPKVIWSG 181

Query: 433 -TDRHVDIPDQSTWNLDPNASYVHICAN 513
            ++++  +P         +A Y+HICAN
Sbjct: 182 KSEKYTKVPTFDGLEQSSDAKYLHICAN 209


>At3g52190.1 68416.m05731 transducin family protein / WD-40 repeat
           family protein similar to St12p protein (GI:166878)
           {Arabidopsis thaliana}; contains Pfam profile: PF00400
           WD domain, G-beta repeat
          Length = 398

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 387 EGSEKIWKSEYGFTSD*SSCRYTGSVNVEL 476
           +GS +IWK+E GF    S+   +G  N+EL
Sbjct: 185 DGSARIWKAEDGFPL--STLERSGDENIEL 212


>At2g46890.1 68415.m05856 expressed protein
          Length = 322

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 291 WSWSICCSTS*FNLQNWHS*LRSDW 365
           W WSI  + + F  +NW    R DW
Sbjct: 113 WIWSIRLTHNYFRRENWEWGAREDW 137


>At5g57740.1 68418.m07218 zinc finger (C3HC4-type RING finger)
           family protein / ankyrin repeat family protein contains
           Pfam profile: PF00097 zinc finger, C3HC4 type (RING
           finger) and Pfam profile: PF00023 ankyrin repeat
          Length = 508

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 214 SNSYRSLSCDSFPVS*CL 161
           S+++RSLSC  FP S CL
Sbjct: 439 SSAFRSLSCRRFPPSLCL 456


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,887,411
Number of Sequences: 28952
Number of extensions: 185298
Number of successful extensions: 365
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)